PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08749
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 623aa    MW: 67109.1 Da    PI: 4.2294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08749genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-11184226754
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  +++Y+++L
  EMT08749 184 MAERRRRKRLNDRLSMLRSIMPKI-----TKMDRTSILGDTIDYVNEL 226
               89*********************7.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.646177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-15180247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-12183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8183226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-4184231No hitNo description
Gene3DG3DSA:4.10.280.102.1E-14184247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MDQLDEQSFL DELMSLRREE APAPAPAPWQ AYPGSGMMTT SDLLFYGGED VAEASSSMDL  60
VGPFQQPMAP LPAAPPHRSH EEYNFDCLSE VCNPYGSCGG VVPGPGVVHG VGQALSQDPL  120
HDAMAEDGTT SGNLHHGGGA SSSPVPFVFG AGGAGENSEM IRGVFPGAYA RSKLNGGTTS  180
KNLMAERRRR KRLNDRLSML RSIMPKITKM DRTSILGDTI DYVNELTERI KTLEEEIGAT  240
PEELNLLNNS YRVSVMNMDR TSILGDTIDY VNELTERIKT LEEEIGATPE DLNLLNTTKN  300
LSSGSSEEMP MRNSTKFVIE KQGDGETRID ICCATSPGVL ISTVSALEGL GLEIEQCVVS  360
CFGDFAMQAS CSQEEGRSQV TSTDEIKQAL FTSAGYGGSS TIQSSAAYDQ IVIVGCVSMD  420
RTAILGDTID YVKELTERIK TLEDETGATP EELNLLSTTK SFSSSSNDEE MPMRNSTKFV  480
VEKQGNGGNT RIEICCTTSP GALISTVSAL DVLGLEIEQC AISCFGDIAM QASCSQEEGR  540
NRVTCTDEIK QAMFTSAGYG GSCASVREYV SMFGMEYWDW ADNRKIPTVG VFGCALLQLL  600
VSSCHPWISN ADTHSTNGGF ITE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185192ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674520.0AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150250.10.0transcription factor bHLH93-like isoform X1
TrEMBLM8BPR70.0M8BPR7_AEGTA; Transcription factor bHLH93
STRINGEMT087490.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-46beta HLH protein 93