PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08716
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 562aa    MW: 61321.5 Da    PI: 4.9496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08716genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-13380427355
               HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
               ++h + ErrRR+++N+ f  L++l+P+        K++Ka+iL +++ Y+++L+
  EMT08716 380 KNHVISERRRREKLNEMFLILKSLVPSiH------KVDKASILAETIAYLRELE 427
               6899***********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-5123201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.272377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-17379435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10380427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-15380431No hitNo description
Gene3DG3DSA:4.10.280.103.7E-17381436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-15383432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MALPVVHPSQ EEPTLPPPAG KQLSNQLAAA VRSINWSYAI FWSISTSRPG VLTWKDGFYN  60
GEIKTRKVTS SADLTADQLV LQRSEQLREL YESLLSGQCD HRARRPAAAL SPEDLGDAEW  120
YYTVCMSYAF RLGQGLPGRS FASNEHVWLC NAQCADTKTF QRALLAKTVA CIPLMSGVLE  180
LGTTNTVLED MDMVNRIGTS FWDLKFPTCS KSEEPNSSPS ADDTGDADMV FEDLNHNTMA  240
TMMPGELELG EVECLSDGSL EQITKEINGF YGLCDELDVG ALEENWIMGG SFEVMSSPEA  300
LPAPAATDGI TDGAVTFSSV EPSRSSCFTA WKRSLDSTKD VAASVAGESQ KLLKKVLAGG  360
AWANNGGDGT ARAQESTNTK NHVISERRRR EKLNEMFLIL KSLVPSIHKV DKASILAETI  420
AYLRELEQKV EELESNRVAG TAVRKLHDVS GKKVLAGSKR KASELGGDDT ERVLPKDDGP  480
SNIVNVTVTD KEVLLEVQCR WKELLMTQVF DAIKSLRLDV LSVRASTPDG LLALKIRAQF  540
AGPGAVEPGM ISEALQKAIR RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-17232019192Transcription factor MYC3
4rqw_B3e-17232019192Transcription factor MYC3
4rs9_A3e-17232019192Transcription factor MYC3
4yz6_A3e-17232019192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385390ERRRRE
2386391RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3613870.0AK361387.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1139H12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177997.10.0anthocyanin regulatory R-S protein-like
RefseqXP_020177998.10.0anthocyanin regulatory R-S protein-like
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLM8B4260.0M8B426_AEGTA; Anthocyanin regulatory R-S protein
STRINGEMT087160.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-83bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]