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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
EMT08668 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family |
C3H |
Protein Properties |
Length: 531aa MW: 58003.9 Da PI: 8.1757 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
EMT08668 | genome | BGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 22.2 | 2.5e-07 | 83 | 103 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C++f++ G C++Gd C +aHg
EMT08668 83 PCPDFRK-GVCRRGDMCEYAHG 103
8******.*************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 531 aa
Download sequence Send
to blast |
MMMSKFPDLP RVATSEKKEY PVDPSLPDIK NSIYASDEFR MYSFKIRPCS RAYSHDWTEC 60 PFVHPGENAR RRDPRKYHYS CVPCPDFRKG VCRRGDMCEY AHGVFECWLH PAQYRTRLCK 120 DGTGCNRRVC FFAHTTDELR PLYVSTGSAV PSPRASATAA MEMAAAMGLM PGSPSSVSAV 180 MSPFTPPRSP SGNGMPPSLG WQQPNVPTLH LPGSSLQSSR LRSSLNARDM PMDDYSLLQD 240 IDSQLINDLC YSRLGSSAGG NHSSRTKSLN PSNLDDLFSA EMVSSPRYNN ADQGAMFSPS 300 QKAAILNQFQ QQQQLLSPIN TGFSPKAVDN QQLHSRSSLL QASLGISSPG RMSPRCVESG 360 SPMNSHLAAA LAQREKQQQQ QHQQHQQTMR SLSSRDLGPS AARASAAVGS PLSSSWSKWG 420 SPSGAPDWGV NGEELGKLRR SSSFELRSGG DDPDLSWVHT LVKESPPEKQ VTTAESINNS 480 VRPSPQMHPS VSNGEGSSVS TQLNRHDQAA VIGALLEQMQ LDEQIGSLAA T
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK375304 | 0.0 | AK375304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3090H13. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G41900.1 | 1e-161 | CCCH-type zinc finger protein with ARM repeat domain |