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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT08336 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 307aa MW: 33053.6 Da PI: 6.712 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.5e-08 | 15 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd+ lv+ +++ Gg+ +W+ ++ g++R++k ++r +y EMT08336 15 KGPWTEEEDKALVEHIQKRGGNggSWRGLPKAGGLNRCGKASRLRGTNY 63 79**************************999999*****9988886666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-15 | 7 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.609 | 10 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-4 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-6 | 15 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.12E-12 | 16 | 92 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 68 | 92 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGRSPCCCHD AGVKKGPWTE EEDKALVEHI QKRGGNGGSW RGLPKAGGLN RCGKASRLRG 60 TNYLRPDIKR GNFSDGEERL IITLHAGLGN KYVGDDRDAP EGPDGQRDQE LLEHAHPQEA 120 VAHGRRPRHP PAAATRPDQP RRQRRRRRAP LGGGAASLGG LDTGALMQAQ LLQQLLQAIG 180 SNNSTTGLIA NLASANTVLN SSSSFVPNQM NYLQTGYLSN NSNFAEQHVV QQQLTNDTSP 240 GTSSFAAAEP ADQLCNTAAS YDVAPAGDWS PTQEFGGLLE PMMELPGLCS LEGDSFWKDT 300 SEDSYRL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 145 | RRQRRR |
2 | 140 | 147 | RRQRRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243271 | 1e-116 | AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169245.1 | 1e-142 | myb-related protein Zm38-like | ||||
TrEMBL | M8B2X2 | 0.0 | M8B2X2_AEGTA; Transcription factor MYB39 | ||||
STRING | EMT08336 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 2e-39 | myb domain protein 9 |