PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08115
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 291aa    MW: 31921.7 Da    PI: 6.7961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08115genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.5e-073277245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+WT eE + + +a +    +   +W+ +a +++ ++t  +++++++
         EMT08115 32 GAWTLEENKVFEEALAAIDLDapdRWEMVALMLP-RKTVADVVNHYR 77
                     79*****************99*************.***********8 PP
2Myb_DNA-binding46.49e-15139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++++ k++G g+W+ I+r   + Rt+ q+ s+ qky
         EMT08115 139 PWTEEEHRLFLKGLKKYGRGDWRNISRNYVTSRTPTQVASHAQKY 183
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2842680IPR017877Myb-like domain
SMARTSM007178.2E-63082IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-103286IPR009057Homeodomain-like
CDDcd001674.53E-53379No hitNo description
PROSITE profilePS5129420.286132188IPR017930Myb domain
SuperFamilySSF466891.15E-17134188IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-18135186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-12136182IPR009057Homeodomain-like
SMARTSM007171.9E-13136186IPR001005SANT/Myb domain
CDDcd001674.50E-12139184No hitNo description
PfamPF002494.5E-12139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAEAWMDVLP PPAPHFAGQP CWAVQQERRG GGAWTLEENK VFEEALAAID LDAPDRWEMV  60
ALMLPRKTVA DVVNHYRALE NDVGFIEAGL VPFPHYDSSS PSSGFTLDWD GGAAGAGGFR  120
RGYCLKRGRA DQERKKGVPW TEEEHRLFLK GLKKYGRGDW RNISRNYVTS RTPTQVASHA  180
QKYFIRLTSG GKDNKRRSSI HDITTVNVPD DDDRDSPSGS PPSVVTTVDT KPSPSYGGQR  240
HAFVPSTLPA GTLGGGHPYG NVKLEHQSSF MSGAGLDLDD SLLLQMQCGQ L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-142899576RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519240.0JF951924.1 Aegilops speltoides clone TaMYB41 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182102.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H75e-74DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM8B3B20.0M8B3B2_AEGTA; Myb-like protein J
STRINGEMT081150.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-73Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]