PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07864
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 335aa    MW: 35211.8 Da    PI: 8.0993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07864genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12158205355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               + h ++Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k Lq
  EMT07864 158 QDHIMAERKRREKLSERFIALSKIVPGL-----KKMDKASVLGDAIKYVKTLQ 205
               6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.77155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17159221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17159213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-13160209No hitNo description
SMARTSM003534.4E-15161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDEPRLLPPV AVGRDAGAVH GAADRRGLRA GGDGGGGADA AAAAAAVRRG GGGGEHRPRK  60
AAKVNTSWDS CVTEQGSPAD SSSPTILSFG GHGHADAFAK APQAPSAAAA AYYGAAPVKP  120
KQEVDAGGVA PFQQVKRSYD AMVAEPARAP SRPAAQNQDH IMAERKRREK LSERFIALSK  180
IVPGLKKMDK ASVLGDAIKY VKTLQEQVKG MEEVARRRPV ESAVLVKKSQ LAAEEDDGSS  240
CDENFEGADA GLPEIEARMS DRTVLVKIHC ENRRGVLVAA LSELESIDLA IMNTNVLPFT  300
ASSIDITIMA TAGEDFSLSV KDIVRKLHQA FKSSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERKRRE
2164169RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675910.0AK367591.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152395.10.0transcription factor bHLH18-like
TrEMBLM8BM750.0M8BM75_AEGTA; Transcription factor bHLH25
STRINGEMT078640.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-54bHLH family protein