PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT07811

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 315aa MW: 34648.3 Da PI: 7.9697

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT07811	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.9	1.7e-08	155	202	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +l + + +K +K +iL A++ + +L EMT07811 155 SKACREKVRRDKLNERFLELGAVLDPG---KTPKIDKCAILNDAIRAVTEL 202 6789********************9...9************977665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.941	151	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.40E-6	154	207	No hit	No description
SuperFamily	SSF47459	1.13E-12	155	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.2E-6	155	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-13	155	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-7	157	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd14686	0.00604	217	249	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MASPEGSNWV FDCPLMDDLA AADFAAASAG GFYWTPPMQP QMHTLAQAVS ATPAPNPWSL 60 WCPHFGCLSR LVHHGNNGFR QSEQNASSIT TLFASGKAKH ELNPPQREYC SHCNSSAVYR 120 EISTLRANLP SRLGLGPHAR NCNSPRSETG AQPSSKACRE KVRRDKLNER FLELGAVLDP 180 GKTPKIDKCA ILNDAIRAVT ELRSEAEKLK DSNESLQEKI RELKAEKNEL RDEKQKLKAE 240 KESLEQQIKF MNARQSLVPH PSVIPAAAFA AAQGQAAGHK LMMPVMSYPG FPMWQFMPPS 300 DVDTSDDPKS CPPVA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269\|PubMed:17028341}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370016	0.0	AK370016.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2103J11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003562971.1	1e-132	transcription factor ILR3
Swissprot	Q9FH37	2e-69	ILR3_ARATH; Transcription factor ILR3
TrEMBL	M8B1E9	0.0	M8B1E9_AEGTA; Transcription factor ILR3
STRING	EMT07811	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2023	38	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	5e-64	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Aparicio F,Pallás V The coat protein of Alfalfa mosaic virus interacts and interferes with the transcriptional activity of the bHLH transcription factor ILR3 promoting salicylic acid-dependent defence signalling response. Mol. Plant Pathol., 2017. 18(2): p. 173-186 [PMID:26929142] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Samira R, et al. The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis. Plant Mol. Biol., 2018. 97(4-5): p. 297-309 [PMID:29882068]