PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07786
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family YABBY
Protein Properties Length: 273aa    MW: 29281.1 Da    PI: 7.5034
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07786genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY199.11.9e-61302226170
     YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee.........................lleelk 76 
                 eq+Cyv+CnfC+tilav vP +slfk+v+vrCGhC++llsvnl++       ++l         + ++                         l  +++
  EMT07786  30 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRNLLlpasaNQL--------PFSPSllsptspasphglldemssfqapssL-LTDQ 121
               679****************************************99887633333233........3333333345666888988888888766632.3333 PP

     YABBY  77 veeenlksnvekeesastsvssekl.......senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                + +  + + +++++a ++ +++++        + e  + + +    + PekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  EMT07786 122 ASPNVSSITSSSNSCAINTPAMSMMpppektpARREPGQRKGAASGTKHPEKRQRVPSAYNRFIKDEIQRIKANNPDITHREAFSAAAKNWAHFPHIHFGL 222
               333333344444455555556666677654432222222222345789***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.4E-6831222IPR006780YABBY protein
SuperFamilySSF470952.75E-8165215IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-5168216IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMSSPAESET SFFPDHLAEQ QQQQQPPFGE QEQLCYVHCN FCDTILAVGV PCSSLFKTVA  60
VRCGHCANLL SVNLRNLLLP ASANQLPFSP SLLSPTSPAS PHGLLDEMSS FQAPSSLLTD  120
QASPNVSSIT SSSNSCAINT PAMSMMPPPE KTPARREPGQ RKGAASGTKH PEKRQRVPSA  180
YNRFIKDEIQ RIKANNPDIT HREAFSAAAK NWAHFPHIHF GLMPDQGLMR KTSIQSQLDG  240
AGDCMLFKDS LYAAAAGGAP PATAASSMGA TPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763500.0AK376350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3121I03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167170.11e-173protein YABBY 5-like
SwissprotQ01JG21e-121YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-121YAB5_ORYSJ; Protein YABBY 5
TrEMBLM8B1D20.0M8B1D2_AEGTA; Uncharacterized protein
STRINGEMT077860.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-48YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]