PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07783
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 265aa    MW: 28815.4 Da    PI: 6.251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07783genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11101145554
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               h ++Er+RRd++N +f  Lr ++P+       +++Ka+ L  A  YI +L
  EMT07783 101 HVQAERQRRDKLNRRFCDLRAVVPNV-----SRMDKASLLADAATYIGEL 145
               889**********************6.....49**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-1594159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.05396145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14101159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-11101150No hitNo description
PfamPF000105.2E-9101145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-11102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDNLLSPSSC FLPPSPSSQY STVGTQVIEF VPLLHEQWLF DDGTMSQNED RELWAPMGST  60
LPRSPELSEL PSGVPATPLS NGKRRGRKPG PRSDSRQTVG HVQAERQRRD KLNRRFCDLR  120
AVVPNVSRMD KASLLADAAT YIGELRTRVA HLEDEANKTL EKGAAAAASR GGPASKFLQV  180
DETVDVRMVG RDGAAVRVTT TANHAPAQLM GALRSLELQV QHACVSHVQG VTLQDVLVDM  240
PASMQDADDL RSALLQALQE QQDSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1999155763Transcription factor MYC2
5gnj_B2e-1999155763Transcription factor MYC2
5gnj_E2e-1999155763Transcription factor MYC2
5gnj_F2e-1999155763Transcription factor MYC2
5gnj_G2e-1999155763Transcription factor MYC2
5gnj_I2e-1999155763Transcription factor MYC2
5gnj_M2e-1999155763Transcription factor MYC2
5gnj_N2e-1999155763Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195108RQTVGHVQAERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195652.10.0transcription factor MYC2-like
TrEMBLA0A3B6A1P30.0A0A3B6A1P3_WHEAT; Uncharacterized protein
TrEMBLM8BXX00.0M8BXX0_AEGTA; Transcription factor MYC2
STRINGEMT077830.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.17e-31bHLH family protein