PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB

Protein Properties

Length: 312aa MW: 34554.9 Da PI: 6.6218

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT07474	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.4	1.8e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+ Ed+ l+++++ +G g+W++ ++ + R++k+c++rw +yl EMT07474 14 RGRWTAKEDDTLAKYIAGHGEGSWRSLPKNAELLRCGKSCRLRWVNYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	56.6	5.8e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEd+l+v++++ lG++ W++Ia++++ gRt++++k++w+ + EMT07474 67 RGNFSKEEDDLIVKLHAALGNR-WSLIASYLP-GRTDNEIKNYWNAH 111 89******************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.356	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.99E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-9	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-13	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	15	68	IPR009057	Homeodomain-like
CDD	cd00167	7.85E-8	16	61	No hit	No description
PROSITE profile	PS51294	26.069	62	116	IPR017930	Myb domain
SMART	SM00717	1.8E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-16	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	2.60E-13	69	112	No hit	No description
Pfam	PF06640	5.9E-5	130	159	IPR010588	Myb-related protein P, C-terminal
Pfam	PF06640	1.0E-5	200	300	IPR010588	Myb-related protein P, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MGRAPCCEKV GLKRGRWTAK EDDTLAKYIA GHGEGSWRSL PKNAELLRCG KSCRLRWVNY 60 LRDGVRRGNF SKEEDDLIVK LHAALGNRWS LIASYLPGRT DNEIKNYWNA HLSRQIHSFR 120 HTYTAGKETT ITIDMNKLSA ASKRRGGRAP RSSTKKQPVL EPTKSMECSR PVGDISSSTS 180 SLPQGNSETM LDQNQPINII TNDTPCSEEP MVMDPIDLNG GVLEPNYANN SMDQIGILQE 240 CGEIEAMLSS IDDMPASVLT SIEHGGHSPR VEDLLDMEWE GFASLLCDLP AQNDRLQESG 300 AAGNERLRVG RA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-23	12	116	5	108	B-MYB
1h8a_C	7e-23	12	116	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189728.1	0.0	myb-related protein P-like
Swissprot	P27898	7e-79	MYBP_MAIZE; Myb-related protein P
TrEMBL	M8BL24	0.0	M8BL24_AEGTA; Myb-related protein P
STRING	EMT07474	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	1e-68	myb domain protein 12

Publications ? help Back to Top
Robbins ML,Sekhon RS,Meeley R,Chopra S A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize. Genetics, 2008. 178(4): p. 1859-74 [PMID:18430921] Sidorenko L,Chandler V RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics, 2008. 180(4): p. 1983-93 [PMID:18845841] Robbins ML,Wang P,Sekhon RS,Chopra S Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism. PLoS ONE, 2009. 4(12): p. e8231 [PMID:20011605] Rhee Y,Sekhon RS,Chopra S,Kaeppler S Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize. Genetics, 2010. 186(3): p. 843-55 [PMID:20823340] Morohashi K, et al. A genome-wide regulatory framework identifies maize pericarp color1 controlled genes. Plant Cell, 2012. 24(7): p. 2745-64 [PMID:22822204]