PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT07124
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 131aa    MW: 14326.5 Da    PI: 5.164
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT07124genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32.1e-1125871886
              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
        B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
              +p +f ++      + +  ++   +g sW + ++ + k +r  l +GW +F+ +n+L++gD +vF+l++
  EMT07124 25 IPTHFQRRLPA---R-RAAVVLRCRGSSWIMSYCGDTKLKR--LDQGWADFAVQNRLQVGDACVFELVS 87
              55566554432...2.256777789********55555555..***********************874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-112387IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-102487IPR003340B3 DNA binding domain
PROSITE profilePS5086310.02424108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-1424106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-1024106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAASFIINCS CPDLLCFLRL TVQIIPTHFQ RRLPARRAAV VLRCRGSSWI MSYCGDTKLK  60
RLDQGWADFA VQNRLQVGDA CVFELVSGYA GDGGNREVVL EVQVLRGGGL PEPEDLATKG  120
DTAEEAIAIL D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184539.14e-74B3 domain-containing protein Os06g0112300-like
SwissprotQ9LHY91e-26Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBLM8BK203e-91M8BK20_AEGTA; B3 domain-containing protein
STRINGEMT071246e-92(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120461933
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]