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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 233aa MW: 26361.1 Da PI: 8.4399 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116.6 | 2.4e-36 | 16 | 124 | 1 | 109 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 lppGfrFhP+d e++ +yL +kv +k++++ +v++evd+ k+ePw+Lp++v+ +eke yfFs++d ky++g ++nra+++gyWkatgkdke++ +++ + EMT06951 16 LPPGFRFHPKDMEIIIFYLIPKVLKKDFDT-TVVREVDLKKYEPWNLPNEVNMGEKERYFFSQKDLKYPNGIQTNRAMNAGYWKATGKDKEIILPpTKSPI 115 79***************************9.99***************99999****************************************9978889* PP NAM 101 glkktLvfy 109 g+kktL+ EMT06951 116 GMKKTLMHA 124 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-38 | 11 | 125 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.982 | 16 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-16 | 17 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MASHLKVQQQ KQKPNLPPGF RFHPKDMEII IFYLIPKVLK KDFDTTVVRE VDLKKYEPWN 60 LPNEVNMGEK ERYFFSQKDL KYPNGIQTNR AMNAGYWKAT GKDKEIILPP TKSPIGMKKT 120 LMHAIEAGSS MMGSVALPMM NNHYFGNHHH QLMVAQPQSS MSFNNHTQQQ QMMHMSADQG 180 FMVGVDPRSG SLCIVSQEDV MTGPSNNNDG NGGASTSNEM SSVNMGMDDI WNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-32 | 2 | 125 | 1 | 124 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-32 | 2 | 125 | 1 | 124 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-32 | 2 | 125 | 1 | 124 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-32 | 2 | 125 | 1 | 124 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-32 | 2 | 125 | 1 | 124 | NAC domain-containing protein 19 |
4dul_B | 1e-32 | 2 | 125 | 1 | 124 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR819761 | 1e-126 | FR819761.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC009 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181832.1 | 8e-54 | NAC domain-containing protein 92-like | ||||
TrEMBL | M8AQY4 | 1e-174 | M8AQY4_AEGTA; Protein CUP-SHAPED COTYLEDON 1 | ||||
STRING | EMT06951 | 1e-175 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15170.1 | 1e-43 | NAC family protein |