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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 105aa MW: 12700 Da PI: 8.8173 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 48 | 4e-15 | 45 | 105 | 1 | 62 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFs 62 lppGf FhPt+ e++ +yL +kv++k +++ ++++e d+ k++ w+Lp++v+ +eke yfFs EMT06950 45 LPPGFGFHPTNMEIIIFYLVPKVQKKAFDT-TMVREEDMKKYDLWNLPNEVNMGEKERYFFS 105 79**************************99.88***************99999********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-16 | 41 | 105 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.372 | 45 | 105 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-5 | 46 | 105 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MEIIIFYLVP KVLKKAFDTT MVREVDMKKY ELWNLPNEKK QQLNLPPGFG FHPTNMEIII 60 FYLVPKVQKK AFDTTMVREE DMKKYDLWNL PNEVNMGEKE RYFFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-13 | 42 | 105 | 14 | 77 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-13 | 42 | 105 | 14 | 77 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-13 | 42 | 105 | 14 | 77 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-13 | 42 | 105 | 14 | 77 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-14 | 42 | 105 | 17 | 80 | NAC domain-containing protein 19 |
3swm_B | 9e-14 | 42 | 105 | 17 | 80 | NAC domain-containing protein 19 |
3swm_C | 9e-14 | 42 | 105 | 17 | 80 | NAC domain-containing protein 19 |
3swm_D | 9e-14 | 42 | 105 | 17 | 80 | NAC domain-containing protein 19 |
3swp_A | 9e-14 | 42 | 105 | 17 | 80 | NAC domain-containing protein 19 |
3swp_B | 9e-14 | 42 | 105 | 17 | 80 | NAC domain-containing protein 19 |
3swp_C | 9e-14 | 42 | 105 | 17 | 80 | NAC domain-containing protein 19 |
3swp_D | 9e-14 | 42 | 105 | 17 | 80 | NAC domain-containing protein 19 |
4dul_A | 1e-13 | 42 | 105 | 14 | 77 | NAC domain-containing protein 19 |
4dul_B | 1e-13 | 42 | 105 | 14 | 77 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375762 | 3e-56 | AK375762.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103J16. | |||
GenBank | FR819761 | 3e-56 | FR819761.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC009 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181832.1 | 4e-20 | NAC domain-containing protein 92-like | ||||
TrEMBL | M8AZ17 | 1e-70 | M8AZ17_AEGTA; NAC domain-containing protein 77 | ||||
STRING | EMT06950 | 2e-71 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39610.1 | 4e-17 | NAC domain containing protein 6 |