PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT06934

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Nin-like

Protein Properties

Length: 1063aa MW: 117104 Da PI: 6.5079

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT06934	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.9e-29	702	752	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ EMT06934 702 EKHVSLKVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 752 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	691	772	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-25	705	752	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.57E-12	953	1012	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-11	956	1011	No hit	No description
SMART	SM00666	0.0015	958	1032	IPR000270	PB1 domain
Pfam	PF00564	3.4E-7	959	1009	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1063 aa Download sequence Send to blast
MVGRLGCIGV ATVSSGRGRT RGGVEALGGG PGQGMTSELW VRKISGDDGD RLVLGVHAHF 60 RSYLGIRSRG SSASAPFPPD WILVSSSKNY PRWKCEFYTK EDSVGFLLAI YFPYMLLKVN 120 VSAGIEILCV LVQKDLILGG ERSGMDENGT PDYSDGGSDM DLLMLSGFDD LDSFPELGAG 180 PSFSDGILSS FSVSPAQQVT HISPSQPSVD AEEQGDVSIT DGSDCSVSLA SKEVMNVSAS 240 TVPKTVYGGV TLTERMLRAL AMLKEASTAG PVLVQVWIPV RNGDHQVLTT SDQPFLLDER 300 LTGYREVSRQ FTFSATEGPG LFPGLPGRVF ISGMPEWTSN VMYYNTSEFL RVDYAIRNEV 360 RGSLAMPVFN SSGGSCCAVL EVVMTQEKDN FCSEMDNLSN ALQSVQLSTV RARTHPQSLT 420 RNQQSVLTEI LDVLQGVCHT HMLPLALAWI PVCPNSSLNV SAEYGDQAIK FGLRKKDVLC 480 VQESACYIND MRMHDFLRAC AEHPLEKGQG VAGNAILSNH PFFSSDVREY DMHDYPLAHH 540 ARKFGLHAAV AIRLRSTYTG DDDYVLEFFL PLTCKVREEQ QLLLDDISIT MQRVCSSLRT 600 VSDAELKENT TTMRSEIRCS SSDVSISSCN QIDVSSEVKI NVLLENQIRN SVEQLADKKY 660 AKFEPGTTSQ NFENCSSTGK NVSLTVLQES TSDGLKIRSS TEKHVSLKVL QQYFAGSLKD 720 AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLEKIQ NVISTVHGVD GVIKYDPATG 780 CIVSSVSHTE EPPIMNVEHR SSDSLPTECR KFQPDYDAYQ REHLGQAVPH KAQNEKRSET 840 HINLNPGGLS RNSHFGRTSK GSECQDASNG SYLTKEMICP GGMEMWVEGA EQKNVLWNSV 900 SMPQQCKIEI ETDKSNAIVE QSLASSSSMT DCSSGGTSSD GTLKKCLKSR PVDGSNASIV 960 VKAAYKDDTV RLKLLPSMKY QDLLEEIAKR LKLSVGAFQL KYKDDEYEWF QFGVDLHNSY 1020 QDKRITYHTG QDFLVLIAFV ETEVKLRSRG MVMNHIKLKV LSK

Sequence ? help Back to Top

Protein Sequence Length: 1063 aa Download sequence Send to blast

MVGRLGCIGV ATVSSGRGRT RGGVEALGGG PGQGMTSELW VRKISGDDGD RLVLGVHAHF  60
RSYLGIRSRG SSASAPFPPD WILVSSSKNY PRWKCEFYTK EDSVGFLLAI YFPYMLLKVN  120
VSAGIEILCV LVQKDLILGG ERSGMDENGT PDYSDGGSDM DLLMLSGFDD LDSFPELGAG  180
PSFSDGILSS FSVSPAQQVT HISPSQPSVD AEEQGDVSIT DGSDCSVSLA SKEVMNVSAS  240
TVPKTVYGGV TLTERMLRAL AMLKEASTAG PVLVQVWIPV RNGDHQVLTT SDQPFLLDER  300
LTGYREVSRQ FTFSATEGPG LFPGLPGRVF ISGMPEWTSN VMYYNTSEFL RVDYAIRNEV  360
RGSLAMPVFN SSGGSCCAVL EVVMTQEKDN FCSEMDNLSN ALQSVQLSTV RARTHPQSLT  420
RNQQSVLTEI LDVLQGVCHT HMLPLALAWI PVCPNSSLNV SAEYGDQAIK FGLRKKDVLC  480
VQESACYIND MRMHDFLRAC AEHPLEKGQG VAGNAILSNH PFFSSDVREY DMHDYPLAHH  540
ARKFGLHAAV AIRLRSTYTG DDDYVLEFFL PLTCKVREEQ QLLLDDISIT MQRVCSSLRT  600
VSDAELKENT TTMRSEIRCS SSDVSISSCN QIDVSSEVKI NVLLENQIRN SVEQLADKKY  660
AKFEPGTTSQ NFENCSSTGK NVSLTVLQES TSDGLKIRSS TEKHVSLKVL QQYFAGSLKD  720
AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLEKIQ NVISTVHGVD GVIKYDPATG  780
CIVSSVSHTE EPPIMNVEHR SSDSLPTECR KFQPDYDAYQ REHLGQAVPH KAQNEKRSET  840
HINLNPGGLS RNSHFGRTSK GSECQDASNG SYLTKEMICP GGMEMWVEGA EQKNVLWNSV  900
SMPQQCKIEI ETDKSNAIVE QSLASSSSMT DCSSGGTSSD GTLKKCLKSR PVDGSNASIV  960
VKAAYKDDTV RLKLLPSMKY QDLLEEIAKR LKLSVGAFQL KYKDDEYEWF QFGVDLHNSY  1020
QDKRITYHTG QDFLVLIAFV ETEVKLRSRG MVMNHIKLKV LSK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249277	0.0	AK249277.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf33g13, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152944.1	0.0	protein NLP2-like
TrEMBL	M8AZZ3	0.0	M8AZZ3_AEGTA; Uncharacterized protein
STRING	EMT06934	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein