PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT06626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ZF-HD | ||||||||
Protein Properties | Length: 152aa MW: 17211.1 Da PI: 10.5416 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 38.4 | 2.8e-12 | 24 | 58 | 3 | 36 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.g 36 +v+YkeC +NhA ++ g+++DGCgE mp + + + EMT06626 24 GVKYKECSRNHALATSGQVMDGCGECMPLGDLNpT 58 799************************98665544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-4 | 21 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.0E-9 | 25 | 54 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 12.464 | 27 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 8.96E-6 | 84 | 150 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-12 | 88 | 151 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MDIKYPKGFV KKVRQAVVAL AVKGVKYKEC SRNHALATSG QVMDGCGECM PLGDLNPTDA 60 SSYNRSLGAL RIQRLPAQLS PAMVAPHDVV MSARKWSRTM CTAYQKMRMQ ELSKHLGWPL 120 QKRDKDIIEA RCHDIGIGKD IFRNWRHSNK RN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181134.1 | 6e-31 | zinc-finger homeodomain protein 9-like | ||||
TrEMBL | M8APY4 | 1e-110 | M8APY4_AEGTA; ZF-HD homeobox protein | ||||
STRING | EMT06626 | 1e-111 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 7e-17 | homeobox protein 30 |