PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06474
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 289aa    MW: 32491.3 Da    PI: 10.8059
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06474genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.2e-18192285799
               .-HHHHT..T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3   7 psdvlks..grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
               +s+v+ +    +++ +k+a+e+        ++  +l+ e++++Wevk+  + + g   +l++GW+eF+++n+Lk +D+++F+l+ + ++ +++v ++r+
  EMT06474 192 KSSVGDNslYAVTICRKYAAEYlpA---GAQTVTRLRAEKSKTWEVKV--NPRIGDaKMLRGGWREFAHDNHLKLKDICLFQLMTDqRKLTMMVDIIRH 285
               5666666333469*********652...34457899************..555444489*************************888*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-19178286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16179286IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-18184284No hitNo description
SMARTSM010191.2E-4186286IPR003340B3 DNA binding domain
PfamPF023622.2E-16192285IPR003340B3 DNA binding domain
PROSITE profilePS5086311.068224286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAMTKRNGDM GSPCQRPWPC LIGLPAIPLR MILEDDEVRR AAIQFLNLLG NPRRWSRSSK  60
YSHLMVSKAC ASGTGPKRGS STHGKTRVDS ATPKRARTTD GRTRAKATST TSVRKEPGDE  120
MFPGGNEPSL VHNHGHEARQ GPVESNKSRG PRKRPYIISS TACLTREQEM YVDKRARSLQ  180
SDVPIYASVM NKSSVGDNSL YAVTICRKYA AEYLPAGAQT VTRLRAEKSK TWEVKVNPRI  240
GDAKMLRGGW REFAHDNHLK LKDICLFQLM TDQRKLTMMV DIIRHNEKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189914.11e-135B3 domain-containing protein Os03g0620400-like
TrEMBLM8AYK30.0M8AYK3_AEGTA; B3 domain-containing protein
STRINGEMT064740.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.15e-07B3 family protein