PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06472
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 536aa    MW: 60377.1 Da    PI: 7.3017
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06472genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.4e-1823111599
               -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               +t+ d ++++ +v+p +f+ ++ g k   s t+ le ++g +++v++    ++++++l++GW+ Fv+an++ e+D+++F++ g+ +f  +v vf++
  EMT06472  23 FTQMDRHSRHSMVIPERFV-NYfGWK--LSGTIELEAPNGSVYDVEI--AERRNKTLLRSGWEAFVDANHIVENDSLMFRYRGSCRF--KVVVFDS 111
               455699999**********.552544..667****************..999999**************************998888..8877775 PP
2B3345.3e-11241334598
               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE- CS
        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfr 98 
               +t+++v     lv+pk+++ +h   +++++t++l+  e++++W  +++++  +gr+ l+    +F+++n+L egD +vF+  ++++ ++f+ +v+++r
  EMT06472 241 MTKPSVKPYPDLVIPKDYTLAHF--PHRNQTIKLQLpEQSKKWYCEFRVKSDGGRCNLK--ECGFARDNHLLEGDLCVFQpmMNRKgRTFKVMVHLLR 334
               67778888888***********7..346678999986788*******888888889899..569****************633344455666666655 PP
3B340.16.6e-134174981090
               HHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
        B3  10 vlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
               v++++ + ++ +fa ++    ++k +s  l+l+   +++ W  ++  r k g++ +++GW +F+++n+L+egD+++F+l++++++
  EMT06472 417 VMTRSSILVSLSFAIKYsatYLQK-GSGSLVLQVeGKSQIWHDEM--REKAGAMRIRAGWTSFASDNNLREGDICLFELMKNEGG 498
               556666778889999998874444.444677776356699*****..********************************987444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-2116114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-2019114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.15519112IPR003340B3 DNA binding domain
CDDcd100171.08E-1920110No hitNo description
PfamPF023621.8E-1623110IPR003340B3 DNA binding domain
SMARTSM010194.4E-1223112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-12228330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-12231338IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-12235331No hitNo description
PROSITE profilePS508638.092237336IPR003340B3 DNA binding domain
SMARTSM010190.0028237336IPR003340B3 DNA binding domain
PfamPF023621.4E-9240334IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-14407505IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-14408506IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.828408510IPR003340B3 DNA binding domain
CDDcd100173.00E-12412508No hitNo description
SMARTSM010190.0018414510IPR003340B3 DNA binding domain
PfamPF023624.4E-10417499IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSNSCECCNR YWTHLHGKVK CFFTQMDRHS RHSMVIPERF VNYFGWKLSG TIELEAPNGS  60
VYDVEIAERR NKTLLRSGWE AFVDANHIVE NDSLMFRYRG SCRFKVVVFD SSGCEKVVSC  120
ARILTNISDQ EPSTNSADIS TSFSDGNTPS SARARSDGCQ SGSSGHLRKR AKKDAISYPS  180
EGSSAEDSPY EHESSEFDDQ TLPTPLYVLS GNCYVTEEDE ANIFALAQEI QPEMPLLVAM  240
MTKPSVKPYP DLVIPKDYTL AHFPHRNQTI KLQLPEQSKK WYCEFRVKSD GGRCNLKECG  300
FARDNHLLEG DLCVFQPMMN RKGRTFKVMV HLLRKASIDH PFGKNGLTSK KNAPTLCIKE  360
EPNDGEETPS LGHEEHGISD EEPYMMPRGT CLTQLQKKKI LEKVEAIGSD LHIYIAVMTR  420
SSILVSLSFA IKYSATYLQK GSGSLVLQVE GKSQIWHDEM REKAGAMRIR AGWTSFASDN  480
NLREGDICLF ELMKNEGGLK KMVVYIIPLA ALFCGMKFKL VADEVCMRKP LIVCIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152556.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLM8BU540.0M8BU54_AEGTA; B3 domain-containing protein
STRINGEMT064720.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-19B3 family protein