PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06403
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family Trihelix
Protein Properties Length: 385aa    MW: 41417.3 Da    PI: 9.7659
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06403genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.81.2e-123741786
  trihelix 17 meerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
              + e+l+rg+l++ +We+v++++     +    +s +qCk+k++nl+kryk + ++  +  s s s +p+++q+e
  EMT06403  3 RFEQLNRGNLRGRDWEDVAAAVtdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRIAG--SASASLWPWYKQME 74
              568999****************6655344446899***************88888877..467779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-14576No hitNo description
Gene3DG3DSA:3.40.1160.108.2E-70139378IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536335.63E-51143378IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.329143379IPR015963Uridylate kinase, bacteria
PfamPF006965.1E-16146358IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.93E-110146379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0048573Biological Processphotoperiodism, flowering
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDRFEQLNRG NLRGRDWEDV AAAVTDGQGK SSGGKSVEQC KNKIDNLKKR YKVECQRIAG  60
SASASLWPWY KQMEQIMGNS PSPGTPKPPA ATNDKARAAG ARAWSSVRIR STTSRSGTRY  120
PSSGTGHTTT MVPYSRSTPL SNPKWKRVLL KIGGTALAGE APHNVDPKVI MLIAREVQVA  180
CRHGVEVAIL MGGRNVFCAD SWVAATGTDR ASTHPIGMMA AVMNAVLLQA SLEKIGVETR  240
VQTALMMQEV AEPYIRRRAI RHLEKGRVVI FGGTGAGTGN PLFTTDTAAA LRASEINADV  300
VLKGVIGDDE YGCPPRSNGS APFEHISFRE LAARGTSKMD MTAITCCEEN NIPVVIFNML  360
EPGNMSRAIC GDQVGTLVDQ SGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A6e-641373781239Uridylate kinase
3ek5_B6e-641373781239Uridylate kinase
3ek5_C6e-641373781239Uridylate kinase
3ek5_D6e-641373781239Uridylate kinase
3ek5_E6e-641373781239Uridylate kinase
3ek5_F6e-641373781239Uridylate kinase
3ek6_A6e-641373781239Uridylate kinase
3ek6_B6e-641373781239Uridylate kinase
3ek6_C6e-641373781239Uridylate kinase
3ek6_D6e-641373781239Uridylate kinase
3ek6_E6e-641373781239Uridylate kinase
3ek6_F6e-641373781239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699350.0AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159183.10.0uncharacterized protein LOC109744472
SwissprotQ7VD614e-80PYRH_PROMA; Uridylate kinase
TrEMBLM8BI420.0M8BI42_AEGTA; Uridylate kinase
STRINGEMT064030.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-138Trihelix family protein