PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06298
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 257aa    MW: 29430.2 Da    PI: 9.5312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06298genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034114138123
               EEETTTTEEESSHHHHHHHHHH..T CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
               + C+ C+k ++  +++++H+++  H
  EMT06298 114 FFCNLCNKQYKLAYEFESHLSSydH 138
               67*****************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-597149No hitNo description
PROSITE patternPS000280116138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKASLRQVAS AYVISESVAS LVVIDPHGKC TNSLLTPVKP HQCILEPIKA GIRDAKLGVG  60
KQEQDDFFTA EDNVQRKRLN VELEETEEHI KKREVTAERE QKIRSEVKEI QKTFFCNLCN  120
KQYKLAYEFE SHLSSYDHNH RKRFKEMKEM QSGGSGNRDD RQKREQQREE KELAKFAQLA  180
DAHRKQQKEK QEQPEISGEQ ATPKNMPTPG NQDQRRTLKF GFSKMTPSKA PVGNMSKKPK  240
IATKVPSVFG NDSDEEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2488230.0AK248823.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf8m08, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166155.11e-156G patch domain-containing protein 8
TrEMBLM8BHV50.0M8BHV5_AEGTA; G patch domain-containing protein 8
STRINGEMT062980.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1017579