PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06148
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 198aa    MW: 22292.5 Da    PI: 10.3956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06148genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.42.2e-3137132187
               EEEE-..-HHHHTT-EE--HHH.HTT.........---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
               f+kvltpsdv+k++r+vlpk++ae+h             +   + + l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD+vvF+ ++ 
  EMT06148  37 FEKVLTPSDVGKLNRIVLPKQHAEKHiplkrapetT---TtadKAVLLNFEDGQGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLVAGDVVVFSCSEY 132
               99*************************998776652...034478899**********************************************96543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-3832147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-3034134IPR015300DNA-binding pseudobarrel domain
CDDcd100176.87E-3035127No hitNo description
PROSITE profilePS5086314.32537146IPR003340B3 DNA binding domain
SMARTSM010191.1E-2137144IPR003340B3 DNA binding domain
PfamPF023621.3E-2837131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MLRKHTYSDE LRRGLRRGRG IGGRAEPTPS WAREPLFEKV LTPSDVGKLN RIVLPKQHAE  60
KHIPLKRAPE TTTTADKAVL LNFEDGQGKV WRFRYSYWNS SQSYVLTKGW SRFVREKGLV  120
AGDVVVFSCS EYGHEKQFYI DYKKTTTVNS GASASPPPPV VETGKGEQAR VVRLFGVDLA  180
GEMRGLAAPA ELELFKRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-473415411126DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164922.11e-145AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS02e-80Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A3B6JPB01e-143A0A3B6JPB0_WHEAT; Uncharacterized protein
TrEMBLA0A453J2D01e-143A0A453J2D0_AEGTS; Uncharacterized protein
TrEMBLA0A453J3291e-143A0A453J329_AEGTS; Uncharacterized protein
TrEMBLM8BHD91e-144M8BHD9_AEGTA; AP2/ERF and B3 domain-containing protein
STRINGEMT061481e-145(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-53related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]