PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06147
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 188aa    MW: 20991.9 Da    PI: 10.5301
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06147genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.63.2e-3034126184
               EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
               f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ 
  EMT06147  34 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIVFSC 126
               89*************************9987776644455999************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-3630126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-2932127IPR015300DNA-binding pseudobarrel domain
CDDcd100174.33E-2933124No hitNo description
SMARTSM010199.3E-2234152IPR003340B3 DNA binding domain
PROSITE profilePS5086313.32434152IPR003340B3 DNA binding domain
PfamPF023626.8E-2834126IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MLRKHTYDDE LRQGLRRGRG RAQPTPAWAR ELLFEKAVTP SDVGKLNRLV VPKQHAEKHF  60
PLKRTPETTT TTGKGVLLNF EDGEGKVWRF RYSYWNSSQS YVLTKGWSRF VREKGLGAGD  120
SIVFSCSAYA SPPVAEAANG EQVRVVRLFG VDIAGEKRGR AAPAEQELFK RQCVAHSQHS  180
PALGAIVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-463112711103DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-137HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201133.11e-120AP2/ERF and B3 domain-containing protein Os01g0141000-like
RefseqXP_020201484.11e-120AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-86Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLM8BT881e-136M8BT88_AEGTA; AP2/ERF and B3 domain-containing protein
STRINGEMT061471e-137(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-51related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]