 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
EMT06016 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
C3H |
| Protein Properties |
Length: 304aa MW: 31460.2 Da PI: 9.6273 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT06016 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 25.3 | 2.7e-08 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C + Ck+Gd+C+FaHg+
EMT06016 96 KTRMCTKYNTAEGCKFGDKCHFAHGE 121
89**********************96 PP
|
| 2 | zf-CCCH | 38.4 | 2.1e-12 | 270 | 295 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt++C +f++ GtC +G+rC+FaHg+
EMT06016 270 YKTKICENFLK-GTCTFGERCHFAHGE 295
9**********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 3.2 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.634 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.5E-8 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-5 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 0.35 | 43 | 60 | No hit | No description |
| SMART | SM00356 | 0.12 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.657 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-13 | 95 | 124 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.92E-8 | 95 | 125 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.6E-5 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 5.77E-14 | 162 | 238 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 7.1E-15 | 166 | 237 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.1E-10 | 167 | 237 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 13.754 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 2.8E-10 | 170 | 233 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.77E-12 | 170 | 228 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 3.2E-14 | 268 | 299 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.89E-9 | 268 | 299 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.4E-9 | 269 | 295 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.619 | 269 | 296 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.2E-10 | 270 | 295 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MDAAARKRSR PESANGGAAG GKRSRESESQ QTGLSSKSKP CTKFFSTVGC PFGEGCHFAH 60
FVPGGYQAVS KSHSLGHAAV SAPSRAPADH AASGVKTRMC TKYNTAEGCK FGDKCHFAHG 120
ERELGRAPSS YMSQESSYAP PMGGRYGGRH EPPPPASMGP PAGNFGASST CKVSVDAALA 180
GGIIGKGGVN TKQICRITGV KLSIRDHESN PDLKNIELEG SFDQIKQAND MVRDLIASIS 240
ASTPSKNPAG AAAPAVRGGG GGGPGGRSNY KTKICENFLK GTCTFGERCH FAHGETEQRK 300
GAAV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK250693 | 0.0 | AK250693.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf85e04, mRNA sequence. |
