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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 69aa MW: 7428.55 Da PI: 8.8275 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 45.7 | 1.1e-14 | 7 | 33 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ EMT05990 7 PGEELCKFYSRYGICKFGVNCKFDHPM 33 689**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.971 | 6 | 34 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 6 | 33 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-7 | 7 | 33 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-12 | 7 | 33 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-6 | 10 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MGLPLRPGEE LCKFYSRYGI CKFGVNCKFD HPMAAPMGVY AYGYSASASP NAPMGRRLLE 60 SPSGSAYAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367946 | 2e-87 | AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151757.1 | 1e-40 | zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q5JLB5 | 1e-29 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A3B6GZA3 | 5e-40 | A0A3B6GZA3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6GZA8 | 2e-39 | A0A3B6GZA8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453GAT1 | 2e-39 | A0A453GAT1_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8AWC4 | 2e-42 | M8AWC4_AEGTA; Zinc finger CCCH domain-containing protein 12 | ||||
STRING | EMT05990 | 3e-43 | (Aegilops tauschii) | ||||
STRING | Traes_3DL_2E5A96ACF.1 | 5e-40 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 2e-16 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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