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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
EMT05876 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family |
M-type_MADS |
Protein Properties |
Length: 83aa MW: 9195.79 Da PI: 9.0129 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
EMT05876 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 86.7 | 1.3e-27 | 3 | 52 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+ rqvtfskRr g+lKKA+EL vLCdaeva+i+fs++g+lyey+s
EMT05876 3 RIEDAPSRQVTFSKRRSGLLKKAFELGVLCDAEVALIVFSPRGRLYEYAS 52
8***********************************************86 PP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3mu6_A | 4e-17 | 3 | 54 | 9 | 60 | Myocyte-specific enhancer factor 2A |
3mu6_B | 4e-17 | 3 | 54 | 9 | 60 | Myocyte-specific enhancer factor 2A |
3mu6_C | 4e-17 | 3 | 54 | 9 | 60 | Myocyte-specific enhancer factor 2A |
3mu6_D | 4e-17 | 3 | 54 | 9 | 60 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM502883 | 2e-84 | AM502883.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM18 (WM18 gene). |
GenBank | DQ512335 | 2e-84 | DQ512335.1 Triticum aestivum MADS-box transcription factor TaAGL18 (AGL18) mRNA, complete cds. |
Publications
? help Back to Top |
- Rice Chromosome 10 Sequencing Consortium
In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Bai Z, et al.
The impact and origin of copy number variations in the Oryza species. BMC Genomics, 2016. 17: p. 261 [PMID:27025496] - Shibaya T, et al.
Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice. Plant Cell Physiol., 2016. 57(9): p. 1828-38 [PMID:27318280] - Han Z,Zhang B,Zhao H,Ayaad M,Xing Y
Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice. Front Plant Sci, 2016. 7: p. 1270 [PMID:27621738]
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