PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT05816
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 326aa    MW: 37455.3 Da    PI: 10.673
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT05816genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.6e-06238258426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               e Cr++++   C++ ++C+FaH+
  EMT05816 238 EVCRDYLK-KMCNR-ESCRFAHP 258
               89******.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.28292120IPR000571Zinc finger, CCCH-type
SMARTSM003560.1593119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.446159185IPR000571Zinc finger, CCCH-type
SMARTSM003562.3160184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774234260IPR000571Zinc finger, CCCH-type
SMARTSM003560.0088235259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MASAEIPNAD TAEPNPRRRS PSPPLPPRKR RLSLSPSRSA SPRRSVSRSR SPRDRRSRSR  60
SRSRSRSRSR SRSRSRSRSP RQPEGKRRRQ NDLTVEACRD YLRDRCTRSD LECKYAHPHQ  120
SVSVDSCGCL AIWFHVKMQA DAIYASLKSL LRSIGLDVPQ VKTVCQDFLR GRCERIACRY  180
THVIAQPMLP PPMRDVPMQM PYPEMVYMPP PPPPLGVPMM APPLSPPRGF ADNKNTVEVC  240
RDYLKKMCNR ESCRFAHPDS QTEVCMFCHL FILVYELSAN PFCIFSTRWH MTRLKFAVIL  300
NEENALDLHA AFTTHPQAEV LLDKVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11630RRRSPSPPLPPRKRR
26777RSRSRSRSRSR
36977RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691861e-132AK369186.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165259.14e-87zinc finger CCCH domain-containing protein 28-like
SwissprotQ0JD072e-56C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLM8AMT40.0M8AMT4_AEGTA; Zinc finger CCCH domain-containing protein 28
STRINGEMT058160.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]