PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT05667
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family CPP
Protein Properties Length: 456aa    MW: 49854.9 Da    PI: 7.7708
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT05667genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR444.4e-142968242
       TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
              +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C Nk e+
  EMT05667 29 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNKVEN 68
              689*************************.********9875 PP
2TCR50.54.1e-16111150140
       TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
               k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  EMT05667 111 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 150
               589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.8E-132868IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.4929151IPR005172CRC domain
PfamPF036381.1E-103065IPR005172CRC domain
SMARTSM011146.0E-19111152IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12114149IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MMHSARSWPL SFTPIKPLVE IKSVTPPKRK KQCNCKNSHC LKLYCECFAA GLYCDGCNCK  60
QCGNKVENEH ARQEAINSTK LRNPKAFQPK IENVPSALSV RKDAGAPSVP KHNKGCHCKK  120
SGCLKKYCEC FQANILCSKN CKCMDCKNFE GSEELQAIIQ GDNASDKNNI QQAANVTLNG  180
AIGSSGYKYS PVRRKRHPED PLGPEANHLD ASQVASSSGL EGCIGYQSRS KMVYRSPLAN  240
TIHPTDVNDL ANHLVIVCRK ATETFLTIAD NKVEMEVERG IYTNADLNND KMKNREVQNG  300
GVSQPDVATH IDQRTAGDLE SPCNNTQEDY RPASPGTQAL LCDEQGTAFG SDYRTSFPSA  360
FHDQDTPELS TLQEKTVLTG FRDYLRLLIT RGKINANNSA GLTEANTSSE HAMELDARRN  420
HGATTGPGVS SFPSEAVERP KAPGDPENPR TSDPSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-273016011132Protein lin-54 homolog
5fd3_B4e-273016011132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150693.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLM8BRT20.0M8BRT2_AEGTA; Uncharacterized protein
STRINGEMT056670.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.19e-87Tesmin/TSO1-like CXC domain-containing protein