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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | FAR1 | ||||||||
Protein Properties | Length: 1115aa MW: 124326 Da PI: 6.4776 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.4 | 1.5e-10 | 1044 | 1093 | 1 | 51 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteke 51 ++Yn+YA +vGFs+rk+++k++ ++g+i+++ Cs+eg+re+ ++k++++ EMT05641 1044 DMYNTYAGKVGFSIRKNQTKRR-HDGSIYQKYIICSNEGHRETASSKDTTR 1093 58**************998776.9999***************998884433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12819 | 3.5E-98 | 40 | 374 | IPR024788 | Malectin-like carbohydrate-binding domain |
SuperFamily | SSF52058 | 3.47E-15 | 406 | 525 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 7.4E-18 | 411 | 518 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF12799 | 3.8E-7 | 456 | 490 | IPR025875 | Leucine rich repeat 4 |
PROSITE profile | PS51450 | 7.142 | 456 | 478 | IPR001611 | Leucine-rich repeat |
PRINTS | PR00019 | 4.8E-6 | 457 | 470 | No hit | No description |
PRINTS | PR00019 | 4.8E-6 | 476 | 489 | No hit | No description |
PROSITE profile | PS51450 | 6.079 | 479 | 500 | IPR001611 | Leucine-rich repeat |
Gene3D | G3DSA:2.60.120.200 | 4.5E-11 | 523 | 608 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF56112 | 4.51E-76 | 577 | 862 | IPR011009 | Protein kinase-like domain |
PROSITE profile | PS50011 | 37.149 | 595 | 866 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 7.1E-35 | 595 | 866 | IPR000719 | Protein kinase domain |
Pfam | PF07714 | 9.4E-48 | 597 | 862 | IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain |
CDD | cd14066 | 6.33E-85 | 601 | 863 | No hit | No description |
PROSITE pattern | PS00107 | 0 | 601 | 623 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:3.30.200.20 | 2.9E-22 | 609 | 672 | No hit | No description |
Gene3D | G3DSA:1.10.510.10 | 4.4E-41 | 674 | 885 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 715 | 727 | IPR008271 | Serine/threonine-protein kinase, active site |
Pfam | PF03101 | 1.8E-7 | 1045 | 1092 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1115 aa Download sequence Send to blast |
MAISHCSAST KLAWILALLL ILVTTTIQVH CQSPPGFISI DCGFTNTSAY NDSITGIQFD 60 PDSRFVEGGL SNKISAEFIA GSDEQQKTLR SFPNGSRNCY TLPSTTGTKY MLRATFTYGN 120 YDGLNKTRDG SLFLFGLHIG VNFWEAVNMT NWDPSSTIWK EIITVAPANS VSVCLINFGS 180 GTPFVSALEL RPLQDLMYPF VNTSVSISYF RRIRFGAATD FITRFSLDPY DRFWEGWPFT 240 YPWIPLNTSS RVRRLPGDNT FQVPEGILQG ATTLDTNYSF LEISVGVGPN LDAKNLQLLP 300 IFHFAEINSS NPSRRFDIYS NDELLFADFS PSRFQADSMH QNGRFLHNPT ATFRLSKTRR 360 SRLPPLINAF ELYSLVRMDN LTTDSDDVNY IKEVTKHYNL ARINWNGDPC SPREYSWEGL 420 TCDYSKSNQN PRIVAVNLST SGLKGGLVIS FMNMVSLENL DLSHNNLTGA IPDYQIKSLK 480 VLDLSYNQLD GPIPDSILQR SQAGLLDLRL EGNPICSKVK DTYCSNKKKK TSTVLIAVIV 540 PVVLVSLLVV MGILWKLYWK GKSGDDEDYA MYEEETPLHI DIRRFTYAEL KLITNNFQSI 600 IGKGGFGIVY HGTLENGDEV AVKVLMETSI AESTDFLPEV QTLSKVHHKN LVTLQGYCQN 660 KKCLALVYDF MPRGNLQQLL KGGDDYSLTW EQRLYIALDA AQGLEYLHES CTPSIVHRDV 720 KTPNILLDKN LVGVISDFGL SRAFNDAHTH ISTVAAGTLG YLDPEYHATF QLTVKTDVYS 780 FGIVLLEIIT GQSPVFMDPQ TVHLPNWVRQ KIAKGSIHDV VDKRLLDQYD ASSLQGAVDL 840 ALNCVENAAI DRPTMTEVVS RLKTWLPAVS SDKQSTSGTP RRKYSMNTEM PKQFKLMISG 900 ACPPPIQHQS DRELLMDEQP EQCPPRDATS RQFLGPRLTA AGGTIAMSSG RPNTSSPLHD 960 RIVLSQSEAE LQSRRSGVAM PDATTCTMDL PPPQVMSTEG QQDDAGADDR GAGEEQTLQV 1020 NKDGQTLIVP EVGKTYDSEE AAYDMYNTYA GKVGFSIRKN QTKRRHDGSI YQKYIICSNE 1080 GHRETASSKD TTRRVAMPVF SLVLAERGFG RCKRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4q5j_A | 1e-63 | 582 | 876 | 29 | 330 | Protein BRASSINOSTEROID INSENSITIVE 1 |
4q5j_B | 1e-63 | 582 | 876 | 29 | 330 | Protein BRASSINOSTEROID INSENSITIVE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146331.1 | 0.0 | probable LRR receptor-like serine/threonine-protein kinase At1g51810 | ||||
TrEMBL | M8AM95 | 0.0 | M8AM95_AEGTA; Putative LRR receptor-like serine/threonine-protein kinase | ||||
STRING | EMT05641 | 0.0 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12020.2 | 1e-15 | WRKY family protein |