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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 631aa MW: 68842.4 Da PI: 8.704 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.5 | 6.5e-20 | 180 | 308 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...kvkaeekewyfFsk.rdkkyatgkrknratksgy..Wkatgkdkevlskk 96 G++F+Pt +yL++ v +++ ++++vi+e+++y++eP+dL + ++ ++++ +fF++ +++k+ +g r +r++ sg W + gk k+v + EMT05508 180 CGMKFNPTPAVATGFYLRRWVLRQQlPDTARVIREARVYDSEPKDLAAvfpRLP-GTHDRFFFTTcKRQKAGRGYRISRTAGSGAggWASNGK-KAVQNDA 278 7*********************9995455677**************85344333.4556677766155566689*****87755444*****9.788888* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ge++g +tL + ++++ +++dW+m+ey++ EMT05508 279 GETIGFLDTLRYSYKDKN--KESDWLMEEYHI 308 ************855554..49********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50096 | 8.846 | 110 | 138 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 7.1E-5 | 112 | 129 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF101941 | 7.59E-24 | 168 | 331 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.898 | 178 | 331 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-10 | 181 | 308 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 631 aa Download sequence Send to blast |
MGKAGRWLRS FLTGKKARDK GTDDGLPAPA KEKRRWSFRR PAASVSARDT ISATSGCQGK 60 GQLASTSSHC FSEVHAVTVQ DQHAVGAAAP HEVAITAAKA PPEGSTCDAE EAAAVKIQSA 120 FRSYLARTAL CALRGMVKLQ AIVRGQLHKC VAYQPACLRS YDTICYDTIG TAVAHAALRC 180 GMKFNPTPAV ATGFYLRRWV LRQQLPDTAR VIREARVYDS EPKDLAAVFP RLPGTHDRFF 240 FTTCKRQKAG RGYRISRTAG SGAGGWASNG KKAVQNDAGE TIGFLDTLRY SYKDKNKESD 300 WLMEEYHICG LDQFAVDDKG EERVLCKIYV SPGSKQGSVT RQQSEAGDHL LVERGVAGAH 360 AAMVVQPQPP RPHEPRQPRV NKKPAFPRPQ EARKPQVIQK PPPPRALDKR RVPTPTQQAP 420 KRRAPPIAEP PRPKRIRAAA AVPASAALSA VNVAVRQAIG GWNSPKRPSW NPSEPPAFLS 480 APPPQRHATI SPRKSHPALT KDMDDFARSL EVDLEMAEDQ STIQQGGHQS TSGSESQPPE 540 VDMSDLLSWF DADAEELAET REHVQDEQED QPEHARSLEG LVADERGDDV IAQDLFNALN 600 SIGNGDDLIS DGGDTDDWLS LPLSAYNGIM Y |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372379 | 1e-144 | AK372379.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3001A07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M8BFJ3 | 0.0 | M8BFJ3_AEGTA; NAC domain-containing protein 68 | ||||
STRING | EMT05508 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22621 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 1e-08 | NAC domain containing protein 52 |