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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05414 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB | ||||||||
Protein Properties | Length: 285aa MW: 30440.8 Da PI: 5.2246 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++++G tW+++a+ g++R++k+c++rw +yl EMT05414 22 KGLWSPEEDERLYIRITRHGVSTWSSVAQLAGLRRSGKSCRLRWMNYL 69 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.2 | 9.3e-14 | 77 | 117 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + ++ E+e ++ + k lG++ W+ Ia++m+ gRt++++k++w+ EMT05414 77 PISKREEETIISLQKSLGNR-WSVIAAKMP-GRTDNEIKNYWN 117 56889***************.*********.***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.113 | 17 | 73 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-10 | 21 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-27 | 21 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-13 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.81E-9 | 25 | 69 | No hit | No description |
PROSITE profile | PS51294 | 16.545 | 74 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-13 | 74 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.97E-10 | 77 | 117 | No hit | No description |
Pfam | PF00249 | 1.3E-11 | 77 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 77 | 123 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MVEKPASQAD VGGEVEAHKE RKGLWSPEED ERLYIRITRH GVSTWSSVAQ LAGLRRSGKS 60 CRLRWMNYLR PDLKKEPISK REEETIISLQ KSLGNRWSVI AAKMPGRTDN EIKNYWNSRI 120 RKRQTISTGG GKGDSGLAKQ QGDLPAADDK AAVLAPPGEK ELVSSMATGA AAPPVPARFP 180 LFACQLLGGG GGGGGDAAIA AAGTTESTTT HENNGAGSES DVSVGNGGGQ DGREGHYYYC 240 AVDGDIDMVH LMSFDDLLEY PAGDLLMDAW DQNGLYSTNT GNSVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-23 | 22 | 123 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183575.1 | 0.0 | myb-related protein 305-like | ||||
TrEMBL | M8AVG6 | 0.0 | M8AVG6_AEGTA; Myb-related protein Hv33 | ||||
STRING | EMT05414 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-46 | myb domain protein 86 |