 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
EMT05403 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
C2H2 |
| Protein Properties |
Length: 354aa MW: 37511.4 Da PI: 5.5801 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT05403 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.1 | 1.6e-05 | 242 | 265 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
++Cp C k+F+r n+++H ++ H
EMT05403 242 FSCPVCFKTFNRYNNMQTHYKRkH 265
89*******************999 PP
|
| 2 | zf-C2H2 | 11.3 | 0.0011 | 272 | 292 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C Cgk F k + ++H +++
EMT05403 272 CRRCGKAFAVKGDWRTHEKNC 292
*****************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MENPYTTFLK NYQQHRYYFS PTPVPAPVAS TTAPPPLSAY SSSPFFSPPP PPAPPSSPPL 60
REALPLLSLA PASRRSRERR SGPGPDDSDD GDEEDGEEGK QAPGPAASSS LHHNQQLAGR 120
QLFADLNSKA TDDAMDSEAG GAAGDVTVAL HIGLPSAGTA AGLISGISAA ARAARDDEEE 180
EDDRVSRELS GGGAEGDGDD DGENEAAVAP VLGFASTPIG RLNKGQYWIP TPTQILIGPT 240
QFSCPVCFKT FNRYNNMQTH YKRKHGLKPF LCRRCGKAFA VKGDWRTHEK NCGKLWYCLC 300
GSEFKHKRSL KDHARAFGQG HGALGGAGLD DDDDCAVSDV EHDGAAAAVA ARSP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK356814 | 0.0 | AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10. |
