PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT05389
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 348aa    MW: 37754.9 Da    PI: 6.6288
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT05389genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-102533311491
               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE. CS
        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkld.grsefe 91 
               + l +p +f   h + +++    +l    g+sW v+l++    + ++ r+ l+ GW++F  +n+L++g+++ F+   g++++ 
  EMT05389 253 QYLNVPMEFGVVHRYTEKK---KVLLRMGGESWAVNLKHgltpT-GRPRTSLRYGWQQFRVDNRLRVGETCFFRALpGDDDGD 331
               4577899998888776433...4566679********9988633.334589***********************543665553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-17232343IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-12233338IPR015300DNA-binding pseudobarrel domain
CDDcd100177.55E-11236341No hitNo description
PfamPF023623.0E-8253330IPR003340B3 DNA binding domain
PROSITE profilePS5086310.419255340IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAAGDVATVF LEMSLGTRLA VSFPAPSTTV ADLKRRVSHE HAACFPHLGQ IAVQSIKIEH  60
GGSWFHLADS MAVRDAFLFQ GINERWHLQV DASPQVDQGM VTQQGHSGGA DSANHSAPAP  120
GRGHGCGGSS SRRCGKASSS DEMLPDQAEV EVEAEREQPL TGKGEGSSNG AEQDREQGAW  180
GRRLRPRTQA GKTPITLSSG SSSESEEMDT NTVGGGSSSS SESEEMDNNT VDAPAPQFVV  240
ELKKCHFVKQ NGQYLNVPME FGVVHRYTEK KKVLLRMGGE SWAVNLKHGL TPTGRPRTSL  300
RYGWQQFRVD NRLRVGETCF FRALPGDDDG DHHVLKVEVR RLDGSYAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3760081e-139AK376008.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3112F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188665.10.0uncharacterized protein LOC109774366
TrEMBLA0A3B6MTG50.0A0A3B6MTG5_WHEAT; Uncharacterized protein
TrEMBLA0A453LB120.0A0A453LB12_AEGTS; Uncharacterized protein
TrEMBLM8AVE70.0M8AVE7_AEGTA; B3 domain-containing protein
STRINGEMT053890.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264