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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT05217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 1019aa MW: 114150 Da PI: 8.2105 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 863 | 913 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp gk+ r++lg++++aeeAa+a++ a+++++g EMT05217 863 PRYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTYDSAEEAARAYDVAAREYRG 913 68********.**********8...557*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14798 | 2.08E-8 | 7 | 126 | No hit | No description |
SuperFamily | SSF52540 | 6.88E-31 | 163 | 350 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 3.5E-12 | 168 | 289 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 1.2E-21 | 170 | 301 | IPR002182 | NB-ARC |
PRINTS | PR00364 | 3.8E-11 | 188 | 203 | No hit | No description |
PRINTS | PR00364 | 3.8E-11 | 260 | 274 | No hit | No description |
Gene3D | G3DSA:3.80.10.10 | 1.4E-17 | 330 | 338 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.40.50.300 | 6.9E-4 | 372 | 449 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52058 | 1.46E-22 | 424 | 743 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.4E-17 | 460 | 744 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 3.8E-11 | 682 | 698 | No hit | No description |
CDD | cd00018 | 9.08E-31 | 863 | 921 | No hit | No description |
Pfam | PF00847 | 6.7E-14 | 863 | 913 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.434 | 864 | 921 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-22 | 864 | 922 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-31 | 864 | 922 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-35 | 864 | 927 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 865 | 876 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 887 | 903 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1019 aa Download sequence Send to blast |
MSKLPAKLDG LLRYRHMLPN GAQDEIPLIK KDLQKMLTIL QDDGNSRAMV KCLMKELREL 60 SYDIDDCIDH YEHAADSMSR RSYFRIPRRQ NSFTLRNTKT TWLPEKLKLR LWMANKIREF 120 SVRSQEALQH FYDYGGTSTA TRCDVSFGSW HPTLYYEEHA KHLLVGIDAL MSKLEASLSK 180 DEEHKLKVVS VLGSGGVGKT TLVNELYRKI EGQFECRAFV RTSKRPDIRR LLISLLSQVA 240 PNHLPDNWKV HNLIGSIRTH LQDKRYLIVI DDVWASSTWE IVKCALPDAT VTIASILASR 300 MNKQPEHWNY VDKSLGYGLG TSPTFEGMEQ VLNLSYNNLP RRLKACMLYL SIYEADYIIL 360 KDDLVKQWTA EGIVCETEEK NVEEISRRYF DELIRNRMIQ PVHLNDNGEV LSCTVHHMTT 420 ARLADKVRRL SLQFGNAEDA TAPTNMRLSQ VRTLAFFGIF KCVPSIVEFK LLQVLILHFW 480 GDEDGISLDI TGIWELYRLR YMQVTCNVIL ELRTQMRDLR SFPRLLHLKL PAQTRLPDGI 540 GHMTSLHTLG YFDLSSNSAE NVQSLGELTN LQDLQLARCT VQTDNLKNNM QCLGMILGKL 600 SNLKSVTLVP AGSSHVDGMS MSVSGDGLSS ISSPPAFLER LELSPHVCIF SSLPEWIGHL 660 ARLSILKIAV CELVKNDLDI LRGLPGLTVL SLHVCTKLTE RIVFEKAGFS VLKYLKFKSS 720 VPWLKFEADA MPNLRKLKLV FNDTGVELES HSTAPVGIEQ LLGLEDISAK IGGGGADARA 780 ALMTAVSSHP RNPRINVKLV DCMIYADGSS RISVPPEPSS RLPVPDATTR SDVELKLLNE 840 IEEPKTLPLP LDQQVIPPHP QPPRYRGVRK RPWGRYAAEI RDPGKKSRVW LGTYDSAEEA 900 ARAYDVAARE YRGPKAKTNF PLTAAPWATC VKAKVATASH ISSNEPSALT TDSSFAAAPW 960 VSTAPRLNLA ASHSSSDEPS ALNTDDDSFT AAPGVSTTLR LSLPPASPSH SSIEESRYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-20 | 864 | 921 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161815.1 | 0.0 | putative disease resistance RPP13-like protein 2 isoform X2 | ||||
Refseq | XP_020161816.1 | 0.0 | putative disease resistance RPP13-like protein 2 isoform X3 | ||||
TrEMBL | M8BQI0 | 0.0 | M8BQI0_AEGTA; Ethylene-responsive transcription factor 4 | ||||
STRING | EMT05217 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2751 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 1e-20 | ethylene response factor 7 |