PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT05069

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 207aa MW: 22685.3 Da PI: 10.403

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT05069	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.6e-08	25	74	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 ++e E+ RR+r++ e+L +l+Pk + p++ ++ L A YIk+L EMT05069 25 KKELEKERRQRMKALCEKLASLIPKeHF--PHTDtMTQLGSLDVAASYIKKL 74 6899*******************776..77777*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.89	20	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.71E-5	25	78	No hit	No description
SuperFamily	SSF47459	4.71E-10	25	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-12	25	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-6	25	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-6	26	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MELKAKPARR GKRTRASGGT AVPVKKELEK ERRQRMKALC EKLASLIPKE HFPHTDTMTQ 60 LGSLDVAASY IKKLKERVDE QQHKKTSIQA IATLLGVSGI STPSITATTS GGAGSQGGEK 120 LEAWPLMVEV RQPGDASMEV RLICSAERPI KLHEVITILE EEGAVIINAN HFVAAHRIFY 180 TIHSRAFSTR IGIDVSRVSE RLGALVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-150	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020201042.1	1e-147	uncharacterized protein LOC109786893
TrEMBL	M8AUF9	1e-148	M8AUF9_AEGTA; Uncharacterized protein
STRING	EMT05069	1e-149	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	2e-13	bHLH family protein