PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT05068

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 74aa MW: 8268.72 Da PI: 11.595

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT05068	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21	6.2e-07	26	61	5	40
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STC CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsK 40 ++ Er RR+r++ e+L +l+Pk + ++++ lsK EMT05068 26 KKRSERERRQRMKALCEKLASLIPKeHF-PHAGVLSK 61 5678*********************554.44444666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.16E-5	16	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-6	26	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MERKAKPASG GERTRASRGT AVLVEKKRSE RERRQRMKAL CEKLASLIPK EHFPHAGVLS 60 KLMSSLRPSA LELA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	2e-53	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190835.1	2e-22	uncharacterized protein LOC109776586
TrEMBL	M8BE76	2e-43	M8BE76_AEGTA; Uncharacterized protein
STRING	EMT05068	4e-44	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133