PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT05021
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 427aa    MW: 47650.3 Da    PI: 10.2922
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT05021genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-18283372198
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
               f+k++++s+v++  +l lp +f+++h  ++ ++ +++lede+g +++  +   +++ +  l++GW++F   ++L++gD++vF+l + ++f  ++ +f+
  EMT05021 283 FVKTMVRSHVSSCFWLGLPSSFCKDHL-PP-REHKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHDLEDGDSLVFELAEPDRF--KIYIFK 372
               89*********************9994.44.4459***************..555444..***********************9876777..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-21275373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-24276372IPR015300DNA-binding pseudobarrel domain
CDDcd100173.41E-27281372No hitNo description
PfamPF023623.5E-17283372IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774283374IPR003340B3 DNA binding domain
SMARTSM010191.5E-23283374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MVAHEATAVA TQPQWKPGIL KWQFGGRGSP ARGQLSEGDL ARGNGADPAM NGGRGPGNGS  60
ELAARSHYDH GRVAGNRLSV SSPRDRFLLL VPLESSRDVT ELNVCRSRRC RAFGTWIGWI  120
AKTFDYINRV NKRFRFRSTR RPGPGATAGA GGASGAGAAY EEERQKRILD NLKHLEDLGI  180
SKMAKSLIQA TRQQHKTPRA SPKSRKKFEA TTEVRRSSRA RTTVSYKDDF PELDDFVRRR  240
RVSKSVHSGR GYTGRISSYQ QQQRAFKRAE KLQDSLDPDN PSFVKTMVRS HVSSCFWLGL  300
PSSFCKDHLP PREHKMVLED EEGVEFDAVY IGNRTGLSGG WRGFSMHHDL EDGDSLVFEL  360
AEPDRFKIYI FKAIEDGKEA EPNDNNADVD SDSAQEVPDQ TDSPVSEPPS SPEPLKGAKR  420
RKLRGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414420LKGAKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719300.0AK371930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2143H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158104.10.0B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-128Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLM8AKJ20.0M8AKJ2_AEGTA; B3 domain-containing protein
STRINGEMT050210.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-41B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]