PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT04828 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 468aa MW: 51995.5 Da PI: 10.2878 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.2 | 6.3e-13 | 13 | 86 | 18 | 96 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +p+kf++++ggk s+t+ le+ +g ++v++ ++ ++++ ++GW+ Fv+a+ ++e+D+++F+++++s+fe v v EMT04828 13 IPNKFIDHFGGK--ISRTIELESHNGGMYTVEV-FELMNETVLRRRGWEAFVDAHSIEENDSLLFRHIEKSRFE--VLV 86 9*****888988..888****************.444444566679*********************9989995..444 PP | |||||||
2 | B3 | 34.4 | 4e-11 | 173 | 251 | 19 | 95 |
-HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS B3 19 pkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 p f++ ++es+ ltl+ ++++W l +rk+++++vlt + W +F ++ng++egD +vF+ + g+ ++ +++v+ EMT04828 173 PQAFCRGA--LPRESQNLTLQRpGKSKKWHPWLYIRKSQCGHVLTgSRWVGFLRDNGVREGDLCVFQPVkGTgTRSKFTVH 251 55666433..3567889***995566*******889999999998678*******************55254455555555 PP | |||||||
3 | B3 | 44.5 | 2.8e-14 | 381 | 462 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr.sefelvvkvfrk 99 ++++ +a+e+ +++ e + +tl ++ + Wev++ r ++g+ l+ GW++F+++n+L++ D+++F+ ++++ ++ +++v+++r+ EMT04828 381 VTISCAYAAEY-LPPGERVAVTLV-RRKKAWEVEM--RARGGGRALAHGWRGFARDNRLRVQDVCLFQpMEKNrQSLTMTVHIIRH 462 46777778777.445555566654.589*******..77777777***********************5457779999****9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.912 | 1 | 90 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-6 | 2 | 90 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.65E-16 | 12 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-14 | 12 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-10 | 13 | 86 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.13E-14 | 13 | 88 | No hit | No description |
PROSITE profile | PS50863 | 9.812 | 155 | 256 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.017 | 159 | 256 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-9 | 173 | 252 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-11 | 173 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.50E-12 | 173 | 253 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.5E-11 | 173 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-16 | 356 | 463 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-18 | 357 | 464 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.73E-17 | 361 | 461 | No hit | No description |
SMART | SM01019 | 8.0E-5 | 363 | 463 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-12 | 368 | 462 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.56 | 407 | 463 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MAWGSRPAVN PAIPNKFIDH FGGKISRTIE LESHNGGMYT VEVFELMNET VLRRRGWEAF 60 VDAHSIEEND SLLFRHIEKS RFEVLVLDSD DCEKVLPSAG IKSASCNVQE SRSVDCIGIS 120 SSVSYIDISS SSGDDTTRSP GSKRFATCER GDSSHPRKTA VNDSSSEEDS GDPQAFCRGA 180 LPRESQNLTL QRPGKSKKWH PWLYIRKSQC GHVLTGSRWV GFLRDNGVRE GDLCVFQPVK 240 GTGTRSKFTV HLLHEPLGAS GSTGPKKRVG NTRVNSAAPE RSTTAYGHGA TAMEKAAPPA 300 PTTRRVNKEQ DDGWNHGRQT QRARQLPKPA RPYILSSTAR LTEEQEREVD RTARAIGSRV 360 PAYVSVMNRS SVGVGNRIYN VTISCAYAAE YLPPGERVAV TLVRRKKAWE VEMRARGGGR 420 ALAHGWRGFA RDNRLRVQDV CLFQPMEKNR QSLTMTVHII RHSGKRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188321.1 | 1e-177 | B3 domain-containing protein Os03g0620400-like | ||||
TrEMBL | M8BDJ9 | 0.0 | M8BDJ9_AEGTA; B3 domain-containing protein | ||||
STRING | EMT04828 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-12 | B3 family protein |