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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT04775 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 837aa MW: 94988 Da PI: 7.3478 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 108 | 127 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++t C++G rC++ H EMT04775 108 CPFYLKTAACRFGVRCSRVH 127 ******************99 PP | |||||||
2 | zf-CCCH | 24 | 6.9e-08 | 237 | 264 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++r+ tC++G C+F+H+ EMT04775 237 WKSAICGEYMRSRfkTCSHGVACNFIHC 264 7999***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.131 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8 | 103 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-4 | 107 | 127 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 1.1E-36 | 108 | 127 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 1.1E-36 | 127 | 147 | IPR009145 | U2 auxiliary factor small subunit |
Gene3D | G3DSA:3.30.70.330 | 2.1E-25 | 133 | 232 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 9.917 | 134 | 234 | IPR000504 | RNA recognition motif domain |
CDD | cd12540 | 1.43E-50 | 135 | 232 | No hit | No description |
SMART | SM00361 | 7.7E-6 | 156 | 230 | IPR003954 | RNA recognition motif domain, eukaryote |
PRINTS | PR01848 | 1.1E-36 | 163 | 178 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 1.49E-16 | 165 | 232 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 1.1E-36 | 191 | 213 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 1.1E-36 | 218 | 242 | IPR009145 | U2 auxiliary factor small subunit |
PROSITE profile | PS50103 | 10.314 | 236 | 266 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.02 | 236 | 265 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 237 | 264 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 1.1E-36 | 256 | 268 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 837 aa Download sequence Send to blast |
MGRFEYNDDH RDETEDDGEW EYVEDGPAEI IWQGNEIIVK KKKIKIPKKT EDKPLSQEED 60 RPTSNPLPPQ SVAVASQRRE PSLSARELLE KVAQETPNFG TEQDKAHCPF YLKTAACRFG 120 VRCSRVHFYP DKSCTLLMKN MYNGPGLVLE QDEGLEFTDE EIEQSYEEFY EDVHTEFLKF 180 GELVNFKVCR NGSFHLRGNV YVHYKALDSA LLAYNSMNGR YFAGKQITCE FVALTKWKSA 240 ICGEYMRSRF KTCSHGVACN FIHCFRNPGG DYEWADWDNP PPKYWSRKMA ALFGPSDDAI 300 FDKASDTPDF ERLHSSDRKR LRSSDDRREA SAANEQRGQE IEDDTGRYCS PMENERVSQA 360 HKHEEKHRDG HGDGARGYNG KTKSRKHRSE RHESLESGCS DWPSEFADAG TSRSPSGSKS 420 TNRYNNHKRS RRQSSDDPNL ERGYSTADKS SGKAHIAKSS SRHYVEDDSY GEKVSGRGKS 480 GKHSDRCDDP DDRWLATNSD VDSDAEAQFP RSSSGVGKGG RNDNAPPDED DRYQRSSSRS 540 ARSRAKDDKS SRKRKKHHSE IRKNSDSDDG PSDSSDIRDL SSHAWRSRSR SNTVRLRGRG 600 SIHRPTRSVG VVFHRSIYTH KYGAPELLPN HVNFAGRHLP VHILMSMKIT DVNMETDALA 660 NHINLLPMHS LNSSMKATDV NMEIEALANH IRLTRRGEGE GTDVGNKKTK KKIFRVPQEE 720 LDDILSFQLP PAWPSLGKRC PSLVGELEKM KESFLAEREK MRREYQIMGY ATYEAEVTDD 780 DDDEEDTLVA IPAATSFHGE KDDAAATSSP WIIPRGRGRK RFRPGVVKQA SGVKKIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 5e-33 | 99 | 263 | 9 | 167 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 551 | 555 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361818 | 0.0 | AK361818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1150D09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147330.1 | 0.0 | zinc finger CCCH domain-containing protein 16 | ||||
Swissprot | Q6YVX9 | 0.0 | C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | M8ASY4 | 0.0 | M8ASY4_AEGTA; Zinc finger CCCH domain-containing protein 16 | ||||
STRING | EMT04775 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9296 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-136 | C3H family protein |
Publications ? help Back to Top | |||
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