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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT04396 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WRKY | ||||||||
Protein Properties | Length: 236aa MW: 25638.8 Da PI: 8.3647 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.5 | 7.4e-30 | 94 | 153 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k++++pr+Y+rC++a +C+vkkkv+rsaed +v++ tYegeHnh EMT04396 94 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApSCQVKKKVQRSAEDRTVLVATYEGEHNHA 153 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.855 | 89 | 155 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.12E-25 | 93 | 155 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-28 | 93 | 155 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.8E-34 | 94 | 154 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-24 | 95 | 152 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MAGWAIPEGF PPTQVPAVHE YDSPQLIWAR MSTGTDSARA ALDMFEGMTE QESAECTSVH 60 EPCNSKRVRA DECKASRVSK LYVHADPSDL SLVVKDGYQW RKYGQKVTKD NPCPRAYFRC 120 SFAPSCQVKK KVQRSAEDRT VLVATYEGEH NHAQPPKMQG SGGRKSADAA AVRASPAPPL 180 AQQQPKQQSM TEAGSAADRK NLAEQMAATL TRDPGFKAAL VSALSGRILE LSPSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 79 | 156 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX047374 | 0.0 | JX047374.1 Triticum aestivum WRKY79 transcription factor (WRKY79) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161280.1 | 1e-106 | WRKY transcription factor WRKY28-like, partial | ||||
Refseq | XP_020197055.1 | 1e-105 | WRKY transcription factor WRKY28-like | ||||
Swissprot | Q0DAJ3 | 1e-74 | WRK28_ORYSJ; WRKY transcription factor WRKY28 | ||||
TrEMBL | M8AIV3 | 1e-175 | M8AIV3_AEGTA; Putative WRKY transcription factor 40 | ||||
STRING | EMT04396 | 1e-176 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1822 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 7e-49 | WRKY DNA-binding protein 18 |