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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT04248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 199aa MW: 22554.5 Da PI: 9.6708 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 86 | 110 | 1 | 25 |
TSSS-HHHHHHHHHHHHHTTTT-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWk 25 +g+WT+eEde+++d+v+++G W+ EMT04248 86 KGPWTQEEDEKIIDLVNKYGLTKWS 110 79******************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.9E-8 | 79 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-10 | 81 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.073 | 81 | 110 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 5.7E-7 | 86 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.67E-6 | 88 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MSHLLFLALL RTLMGWVCLQ RSSPLQSYKL ARQCSGFLLL SVSPTKTLKF GDKEKYLPTQ 60 LNYFRIGQRC NVYIHGRRFF NTELIKGPWT QEEDEKIIDL VNKYGLTKWS HCQLPELPAA 120 DPRMFPNMFN LSALGQVTRH ALRVYFGGLP PIANEQTVAL FFNQVLAAIG GNTFGLGDAV 180 VNMKLIFEFI QNILGGIII |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ236494 | 3e-51 | HQ236494.1 Triticum aestivum MYB3R transcription factor (MYB3R1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M8BBZ5 | 1e-146 | M8BBZ5_AEGTA; Uncharacterized protein | ||||
STRING | EMT04248 | 1e-146 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-10 | myb domain protein 3r-5 |