PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT03319
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family Trihelix
Protein Properties Length: 928aa    MW: 104199 Da    PI: 9.5837
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT03319genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.13.5e-16268329665
  trihelix   6 evlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
               e+++Li+ar   ++     r++++k+lWe+v++++r+rg++r++ qCk+kw+nl +ryk + 
  EMT03319 268 ETRELIAARGGAGSGRPppRAAAAKTLWEAVADALRARGYRRTADQCKCKWKNLVNRYKICP 329
               8999*****9888877655799*************************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-12268330No hitNo description
PROSITE profilePS500906.075268322IPR017877Myb-like domain
CDDcd122031.12E-14268328No hitNo description
CDDcd136613.39E-147583902No hitNo description
SuperFamilySSF538502.79E-34585798No hitNo description
PfamPF133433.5E-26644797No hitNo description
PRINTSPR009091.4E-12650666IPR001188Bacterial periplasmic spermidine/putrescine-binding protein
Gene3DG3DSA:3.40.190.101.0E-48659829No hitNo description
PRINTSPR009091.4E-12679693IPR001188Bacterial periplasmic spermidine/putrescine-binding protein
PRINTSPR009091.4E-12697716IPR001188Bacterial periplasmic spermidine/putrescine-binding protein
PRINTSPR009091.4E-12783802IPR001188Bacterial periplasmic spermidine/putrescine-binding protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015846Biological Processpolyamine transport
GO:0009941Cellular Componentchloroplast envelope
GO:0016021Cellular Componentintegral component of membrane
GO:0042597Cellular Componentperiplasmic space
GO:0019808Molecular Functionpolyamine binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MATTNSRGKT WRKPLACQIL LSGTPLTTTL VLEVTKEYQD WDSLTGKFAG SANVPFLLLQ  60
LPQIILNYRN LVDGNKTALF AVPWLGMLTG LLGNLALVSY FAKKRETEAV IVQTLGVIST  120
YVVIVQLAMA ESMPFPQFVA TSAVVGAGLV LNLLNYIGWL PETLWLLWED FTTIGGLTVL  180
PQVMWSTFVP VIPSSILPGI ICGSLAVAAV AMARMGKLSE GGTKFVGSLS GWTATLLFMW  240
MPVAQMVHRF YLGMCPTRLG QPGLHVLETR ELIAARGGAG SGRPPPRAAA AKTLWEAVAD  300
ALRARGYRRT ADQCKCKWKN LVNRYKICPR TGTEAFLSIV VPNWGNMSAQ VNMVRLGKET  360
SDPENGRQCP FFEELHAVFT ERARNMQRQL LQSESGTSVK KKLKRPSGDR SSGESDDNEY  420
GVEVSDDEKP VISKKRKAGD KGQPSQRMAE NSRTGSSSIH DLLQEFLVQQ QHVDMLWHET  480
MERRAQERLI FEQEWRQSMQ KLEQERLMLE QSWIEREEQR RMREEARAQK RDSLMTTLFK  540
HKYQTKPPPP PAAVEAKEQE EGDEEWEAAL QQWKSKTYAL SVPLRVVALR GSFPPAWIKD  600
FIEAQGKRLK FSPEFRPSID ALFSELSKCV DKGQVHLCRN QNGEADSNGS VWGVPYRWGT  660
VVIAYKKSKF KQHNLKPIQD WEDLWRPELA GKISMIDSPR EVIGAVLKQL GSSYNTIDME  720
TEVNGGREAV LSSFTQLQKQ VQLFDSMNYL KSFGVGDVWV TVGWSSDVIP AAKRMSNVAV  780
VVPKSGSSLW ADLWAVPCAT RFQTDRIGGR TRGPSPLIHQ WFDFCLQSAR SLPFRQEIIP  840
GASPLFLENP APEVLQDRNK KKPKLESNLV RGVPPPEILE KCEFLEPLSD KAVGDYQWLM  900
SRVHRPRGGL LGTMLQKIST MLDLKSRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ttl_A6e-1564480196260Polyamine transport protein
3ttl_B6e-1564480196260Polyamine transport protein
3ttn_A6e-1564480196260Polyamine transport protein
3ttn_B6e-1564480196260Polyamine transport protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3570110.0AK357011.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1043P23.
GenBankAK3612630.0AK361263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1136F10.
GenBankAK3614620.0AK361462.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1141D10.
GenBankAK3732380.0AK373238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3024M21.
GenBankAK3762310.0AK376231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3118L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824197.10.0uncharacterized protein LOC112899804
TrEMBLN1QRW00.0N1QRW0_AEGTA; Uncharacterized protein
STRINGEMT033190.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1056922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-17Trihelix family protein