PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT03074

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 664aa MW: 74415.9 Da PI: 5.7275

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT03074	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	311.6	1.7e-95	275	658	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 ++lL++cAeavss+d + a++lL+r++ ++sp+gd+ qRla+yf+++L+arla+++s+ly+al ++t ++e ++a++l ++ +k++ l a ++I EMT03074 275 ETLLIRCAEAVSSNDVHGASKLLERIKWHSSPTGDAKQRLAHYFAQGLEARLAGTGSRLYRALMGKHTL---TIELIKAFHLHMAACCSMKVGLLFAINTI 372 789**********************************************************999998...8************************ PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 +av+g +++Hi+ ++i+ G+QWp Ll+ La+R++gpp++RiTg++ p++g ++ +ee g+rL++ A+++gvpfef++ +a++led++ e+L+++p+E+ EMT03074 373 CKAVAGRRKLHIVHYGITTGFQWPDLLRLLANREGGPPQVRITGINTPRPGlrPAQIMEEAGDRLNNCARQFGVPFEFRA-IASKLEDVRAEDLHIDPDEV 472 ***********************************************999************************.7*************** PP GRAS 202 laVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 l+Vn+ ++ +l+des++ + +rd vL+ v +++P v+v + + ++++ F++rf +al+y++alfd +e+++pr++++r vEr +++r++ n++ac EMT03074 473 LVVNSLYEFRTLMDESLTFDMvsPRDMVLNNVSKMRPAVFVQSLVNGPYSAAFFMTRFRHALYYFTALFDVMENTVPRDNDQRLLVERDIFARSAINMIAC 573 ***********98765555************************************************************************** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsek............aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 eg++r+er +++++W++r e+aG++++pl+ + ++ k ++ + + +++ e++ +l++gWk+r L++ S W EMT03074 574 EGTDRVERPQNYKEWQARNERAGLRQLPLDPEraglrqlpldpdVVLMLKDQVKSRYHKHFMISEDHCWLLQGWKGRVLYAHSTW 658 **************9999888777665411111111000055555555666666779999******************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.579	248	627	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.9E-93	275	658	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MAATPEELLG LTEPAPLSPS IFLDLPPPPT THGDSQQPQN DLALEYISRM LTEEDIVDKF 60 FYQYPDHPEL LQAEQPFAEI LADTSSDAHE SFAASTSILM PSQGNGMDLM VSGCQVQYPA 120 FFLNGTGTGT GIMEPSGLVF PIPSESSTRT DMLSSMAFFK GMEEANRFLP ADNVMVAGRG 180 RKKRPGMDGE AEAGLGRSSK QITALPRCVQ EEEEEEEEEA TALEMLDRLV LNGYDAHPGE 240 MQEVVRVTLE DKENKAAIGR RGRRGARHTV VTDLETLLIR CAEAVSSNDV HGASKLLERI 300 KWHSSPTGDA KQRLAHYFAQ GLEARLAGTG SRLYRALMGK HTLTIELIKA FHLHMAACCS 360 MKVGLLFAIN TICKAVAGRR KLHIVHYGIT TGFQWPDLLR LLANREGGPP QVRITGINTP 420 RPGLRPAQIM EEAGDRLNNC ARQFGVPFEF RAIASKLEDV RAEDLHIDPD EVLVVNSLYE 480 FRTLMDESLT FDMVSPRDMV LNNVSKMRPA VFVQSLVNGP YSAAFFMTRF RHALYYFTAL 540 FDVMENTVPR DNDQRLLVER DIFARSAINM IACEGTDRVE RPQNYKEWQA RNERAGLRQL 600 PLDPERAGLR QLPLDPDVVL MLKDQVKSRY HKHFMISEDH CWLLQGWKGR VLYAHSTWAS 660 QVID

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MAATPEELLG LTEPAPLSPS IFLDLPPPPT THGDSQQPQN DLALEYISRM LTEEDIVDKF  60
FYQYPDHPEL LQAEQPFAEI LADTSSDAHE SFAASTSILM PSQGNGMDLM VSGCQVQYPA  120
FFLNGTGTGT GIMEPSGLVF PIPSESSTRT DMLSSMAFFK GMEEANRFLP ADNVMVAGRG  180
RKKRPGMDGE AEAGLGRSSK QITALPRCVQ EEEEEEEEEA TALEMLDRLV LNGYDAHPGE  240
MQEVVRVTLE DKENKAAIGR RGRRGARHTV VTDLETLLIR CAEAVSSNDV HGASKLLERI  300
KWHSSPTGDA KQRLAHYFAQ GLEARLAGTG SRLYRALMGK HTLTIELIKA FHLHMAACCS  360
MKVGLLFAIN TICKAVAGRR KLHIVHYGIT TGFQWPDLLR LLANREGGPP QVRITGINTP  420
RPGLRPAQIM EEAGDRLNNC ARQFGVPFEF RAIASKLEDV RAEDLHIDPD EVLVVNSLYE  480
FRTLMDESLT FDMVSPRDMV LNNVSKMRPA VFVQSLVNGP YSAAFFMTRF RHALYYFTAL  540
FDVMENTVPR DNDQRLLVER DIFARSAINM IACEGTDRVE RPQNYKEWQA RNERAGLRQL  600
PLDPERAGLR QLPLDPDVVL MLKDQVKSRY HKHFMISEDH CWLLQGWKGR VLYAHSTWAS  660
QVID

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	2e-40	275	625	34	410	Protein SHORT-ROOT
5b3h_E	2e-40	275	625	34	410	Protein SHORT-ROOT
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375062	0.0	AK375062.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084L15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172176.1	0.0	scarecrow-like protein 9
TrEMBL	R7W0J0	0.0	R7W0J0_AEGTA; Uncharacterized protein
STRING	EMT03074	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-123	GRAS family protein