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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT03073 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRAS | ||||||||
Protein Properties | Length: 649aa MW: 72721.9 Da PI: 5.5989 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 317.9 | 2.1e-97 | 270 | 640 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 + lLl cA+ v++g+ + a +lL++++++as +gd+ qRla +f+++L+arla+++s++y++l +++ts + e l+ ++lf ++ + ++++ +I EMT03073 270 RGLLLCCAQEVATGNRHGAGNLLKQIRQHASATGDAAQRLAYCFAKGLEARLAGTGSQVYRSLMAKHTS---TMEFLKGYELFMAACSFKRVAFTFSSMTI 367 679************************************************************999999...899************************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 +aveg++++Hi+D+++ +G QWp Ll La+R++gpp++RiTg++ p++g +++leetg+ L++ A+++g+pf+f++ +a ++e+++ e+L+++p+E+ EMT03073 368 FDAVEGKSKLHIVDYGLHYGCQWPGLLAWLATRDGGPPEVRITGIDLPQPGfrPAKRLEETGRALSNCARQFGLPFKFHA-IAAKWETIRAEDLNIDPDEV 467 **************************************************9*****************************.799***************** PP GRAS 202 laVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 l+Vn ++ +l+des+ ++ +rd vL+ +++++P+v++ + + ++ Fl+rf eal +ys++fd+l+a+ p++s +r ++Er ++g+ + n +ac EMT03073 468 LVVNDLFNFNTLMDESLVIDRpsPRDVVLSNIREMQPDVFIQGVVNGSS-GPFFLARFREALFFYSSVFDMLDATTPPDSYQRFVLERDMFGQCALNTIAC 567 ****************98877669****************998888776.89************************************************* PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e a+r+er et+++W+ r ++aG++++pl+ ++k a+ ++ + +++ v+ ++g+l++gWk+r L++ SaW EMT03073 568 ESADRVERPETYKQWQLRNQRAGLRQLPLKPIITKVASGKVKSLYHKEFVVDVDQGWLLQGWKGRILYAHSAW 640 *********************************************999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.449 | 243 | 621 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.3E-95 | 270 | 640 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MPIAREELLG LKEHMEPPPP SPSVYLDIPP SPCGGSVGDL VLPYITRILM EEDIDDRFFY 60 QYPDHLAFLQ AQQQFTQILD DAKNLPSCEG GDMEKMHSDA SLQGIRGGSM CLADKDVPSW 120 TFSDGAEVDN NGDQSKLNRS NEAMLNFAFL KGMEEANKFL PRDNQPQADV FSVDQAKEIF 180 GRSISGGARK GQRDVDKLEE VVGRSSKLLM PELEEDGARE MINKIMLNSY ELCGETMEKL 240 QITMENIRAD RKNKKAVRGK QGKKEAVDLR GLLLCCAQEV ATGNRHGAGN LLKQIRQHAS 300 ATGDAAQRLA YCFAKGLEAR LAGTGSQVYR SLMAKHTSTM EFLKGYELFM AACSFKRVAF 360 TFSSMTIFDA VEGKSKLHIV DYGLHYGCQW PGLLAWLATR DGGPPEVRIT GIDLPQPGFR 420 PAKRLEETGR ALSNCARQFG LPFKFHAIAA KWETIRAEDL NIDPDEVLVV NDLFNFNTLM 480 DESLVIDRPS PRDVVLSNIR EMQPDVFIQG VVNGSSGPFF LARFREALFF YSSVFDMLDA 540 TTPPDSYQRF VLERDMFGQC ALNTIACESA DRVERPETYK QWQLRNQRAG LRQLPLKPII 600 TKVASGKVKS LYHKEFVVDV DQGWLLQGWK GRILYAHSAW VADDTSSEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-39 | 273 | 640 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172175.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A453HSN7 | 0.0 | A0A453HSN7_AEGTS; Uncharacterized protein | ||||
TrEMBL | R7W0X6 | 0.0 | R7W0X6_AEGTA; Uncharacterized protein | ||||
STRING | EMT03073 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-135 | GRAS family protein |