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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT03072 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | GRAS | ||||||||
Protein Properties | Length: 1165aa MW: 131134 Da PI: 6.3745 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 296.6 | 6.3e-91 | 195 | 531 | 2 | 340 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lL++cA+av + d + a +lL++++++asp+gd++qRla f+e+L+arl++++s++y l+++ ts ++++++a++lf ++ + k+++l aN+aI EMT03072 195 HTLLIHCAKAVMD-DRRSAGELLKEIKQHASPTGDATQRLAYWFAEGLEARLTGTGSQVYGLLTAECTS---TVRHMQAYQLFMSTCCFRKVAFLFANKAI 291 679********97.8999******************************************999998888...899************************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 +a+ g++r+Hi+D+++ G+QWp Ll+ LasR++gpp++RiT v+ p++g ++ +e++g+rL+++A+elgvpf++++ ++ +++++ +e+L+++p+Ea EMT03072 292 FNAAVGKSRLHIVDYGLHSGFQWPELLRWLASRDGGPPEVRITHVELPQPGvyPEKHMEQIGNRLTDIAQELGVPFKYRA-IMAQWQTICVEDLDMEPDEA 391 ********************************************************************************.6999**************** PP GRAS 202 laVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 laVn +++ +l+desv ++s +rd+vL + +++P+v+v + + ++ ++ Fl rf eal y+salfd+l+a++pres+ r +Er ++g+ + n++a EMT03072 392 LAVNDQFNFRTLMDESVVIASpnPRDAVLGNISKMKPDVFVQSTVNGSY-GTFFLSRFREALFYHSALFDMLDATMPRESKLRLALERDVFGWMVLNAIAY 491 *****************9998889***********************99.789************************************************ PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 eg++r+er et+++W+ r ++aG++++pl+ +++k a+ + EMT03072 492 EGEDRVERGETYKHWQIRNQRAGLRQLPLNRETVKMARDM 531 ********************************99999876 PP | |||||||
2 | GRAS | 316.2 | 7e-97 | 785 | 1157 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL++cA+av + d ++a +lL++++++asp+gd++qRla f+e+L+arl++++s++y +l+++ ts + + a++ f ++ + ++s+l aN+ EMT03072 785 HTLLIHCAKAVMD-DRRRAGELLKEIQQHASPTGDATQRLAYWFAEGLEARLTGTGSQVYGTLTAKGTS---AVAHSEAYQEFISACCFRNVSFLFANS 879 679********97.999**********************************************999999...899999********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL..r 195 aI +a+ g +r+Hi+D++ +G+QW Ll+ La+R++gpp++RiT ++ p++g ++ +ee+g rL+ +A+elgv+f++++ + +++++++e+L + EMT03072 880 AIFNAAVGRSRLHIVDYGFRYGFQWSELLRRLAARDGGPPEVRITHIDLPQPGfhPEKHMEEIGYRLTGIARELGVSFKYRA-ILAQWQTVSIEDLdlD 977 ****************************************************9999**************************.6889999999998334 PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++p+E+laVn ++ +l+desv + s +rd+vL + +++P+v+v + + ++ ++ Fl rf eal +ysalfd+l+a++pre++ r +Er ++g+ EMT03072 978 LEPDEVLAVNDLYNFRTLMDESVVIGSpnPRDTVLGNISKMKPDVFVQSTVNGSY-GTFFLSRFREALFFYSALFDMLDATMPRENKLRLALERNIFGW 1075 566********************9988779***********************99.789**************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + n++a eg++r+er+et+++W+ r ++aG++++pl+ +++k a+ ++++ + + + ++e++++l++gWk+r L++ S W+ EMT03072 1076 VVLNAIAYEGTDRVERCETYKHWQVRNQRAGLRQLPLDRETVKMARDMVKNKYHKDFLIDEDHHWLLQGWKGRILLAHSTWE 1157 ***************************************************99888*************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.769 | 168 | 545 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-88 | 195 | 531 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 55.736 | 758 | 1137 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-94 | 785 | 1157 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 1165 aa Download sequence Send to blast |
MADDDSNCFA VQDHLALPYI TQILMEEEDD VDEDNPALLK AQRPFAQILS SSMHASTLMA 60 DQGGALALDV HSPSSPIFKF KGVDEVRSLL LLPDGDYSTH MFSTAFLRGM EEANKFLPTN 120 CELTTTGGHD QPKEKSGRGR KDRHGEVEAD VSRTSRLVEA GAGEVFDQML TAMGNETGNS 180 NKKGRKSKAR VVDLHTLLIH CAKAVMDDRR SAGELLKEIK QHASPTGDAT QRLAYWFAEG 240 LEARLTGTGS QVYGLLTAEC TSTVRHMQAY QLFMSTCCFR KVAFLFANKA IFNAAVGKSR 300 LHIVDYGLHS GFQWPELLRW LASRDGGPPE VRITHVELPQ PGVYPEKHME QIGNRLTDIA 360 QELGVPFKYR AIMAQWQTIC VEDLDMEPDE ALAVNDQFNF RTLMDESVVI ASPNPRDAVL 420 GNISKMKPDV FVQSTVNGSY GTFFLSRFRE ALFYHSALFD MLDATMPRES KLRLALERDV 480 FGWMVLNAIA YEGEDRVERG ETYKHWQIRN QRAGLRQLPL NRETVKMARD MVMVWWIHAI 540 LARKMKFKIG SKKACRFKVL MVLRVYAVQA IGGSGLEIPN DYYIQDWLEG LAVKDRRSGV 600 DHLALPNIAR ILMEEEDDID EDNPALLKAQ RPFAQILSSS MHASTLMADQ GGALASDMHS 660 PSSGISKFKG VDDVRSLLLL ANGEFSTDIF STAFLKGMEE AKKFLPTNSE LTATGEQDQP 720 KEKSSRGRKD WSDEVEADFS RTDRLVEAGA CEVFDFNQMC SSMDNETGNS NKKGRKSKAR 780 VIDLHTLLIH CAKAVMDDRR RAGELLKEIQ QHASPTGDAT QRLAYWFAEG LEARLTGTGS 840 QVYGTLTAKG TSAVAHSEAY QEFISACCFR NVSFLFANSA IFNAAVGRSR LHIVDYGFRY 900 GFQWSELLRR LAARDGGPPE VRITHIDLPQ PGFHPEKHME EIGYRLTGIA RELGVSFKYR 960 AILAQWQTVS IEDLDLDLEP DEVLAVNDLY NFRTLMDESV VIGSPNPRDT VLGNISKMKP 1020 DVFVQSTVNG SYGTFFLSRF REALFFYSAL FDMLDATMPR ENKLRLALER NIFGWVVLNA 1080 IAYEGTDRVE RCETYKHWQV RNQRAGLRQL PLDRETVKMA RDMVKNKYHK DFLIDEDHHW 1140 LLQGWKGRIL LAHSTWEADG ASSHC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-40 | 198 | 1156 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172172.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | R7W4N3 | 0.0 | R7W4N3_AEGTA; Uncharacterized protein | ||||
STRING | EMT03072 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-117 | SCARECROW-like 14 |