PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT03070

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 675aa MW: 75081.2 Da PI: 6.8566

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT03070	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	336.1	6.2e-103	298	669	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lLl+cA+a+s+++ + a +lL+r+++++sp+gd+ qRla+yf+++L+arla+ +sely++l s+ s +++ l+a +l+ ++ + k++++ a ++I EMT03070 298 HTLLLNCAQALSTDNRQSAIELLKRIRQHSSPKGDAGQRLAHYFANGLEARLAGRGSELYQSLLLSRIS---VADFLKANQLYMAACCCKKVAYIFADKTI 395 679**********************************************************999998...************************* PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 +av+g++r+Hi+D++++qGlQWp Ll+ La+R++gpp++RiTg++ p++g + +eetg+rL++fA+ +gvpf+f+ + + e++++e+L+++++E+ EMT03070 396 CNAVAGKRRLHIVDYGLNQGLQWPGLLRMLAAREGGPPEVRITGIDLPQPGfhGAYHIEETGRRLSNFARVFGVPFKFRG-IPAKRETVRPEDLNIDRDEV 495 **********************************************999999********************.69999*********** PP GRAS 202 laVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 l+V + q +l+des+ + +rd+vL+ +++++P+v+++ + +++++sFl+rf eal +ysa fd l++++pr++e r +Er ++gr+ nv+ac EMT03070 496 LVVISLCQFRHLMDESLGFDGpsPRDQVLNNIRKMRPDVFIHGIMNGSYGATSFLTRFREALFHYSAQFDLLDTTVPRDNEGRLLLERDIFGRSCLNVLAC 596 ************98876669************************************************************************* PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ega+r+er et+++W+ r ++aG++++pl+ +++k + ++ + + + v+ ++ +l+ Wk+r L++ S+W EMT03070 597 EGADRVERPETYKQWQLRNHRAGLRQLPLNPEVVKLVLDKVKDNYHRNFVVDADQRWLLHRWKGRVLYAWSSW 669 *****************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.384	271	650	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-100	298	669	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MAATPEEFLG QQGFLARLEP PSPSLFLDLP PTPRDDDGHS SFDDMVLPYI SRLLMEEGTE 60 DHLFYLYPNH PAVLRAQQPF AQILVDVADS ASASGSTSSP SPSSSSDATA STTPSTATAS 120 ASASPDDAPV QISRPPYTDV NGHASASPDN HSSGLLNGDE MAKRPSSDFF SHLLPGDQDM 180 LNLAFRKGME EASKFLPPDI SLPPINEGTV VGGGNAVSLK KKRAALPLEP DVGRPSKLMM 240 PEQEERKMFD EMMFQEHEIC MKGTHNLIAA ADGEPGKNSR KKDRSRKAVD DREMVDLHTL 300 LLNCAQALST DNRQSAIELL KRIRQHSSPK GDAGQRLAHY FANGLEARLA GRGSELYQSL 360 LLSRISVADF LKANQLYMAA CCCKKVAYIF ADKTICNAVA GKRRLHIVDY GLNQGLQWPG 420 LLRMLAAREG GPPEVRITGI DLPQPGFHGA YHIEETGRRL SNFARVFGVP FKFRGIPAKR 480 ETVRPEDLNI DRDEVLVVIS LCQFRHLMDE SLGFDGPSPR DQVLNNIRKM RPDVFIHGIM 540 NGSYGATSFL TRFREALFHY SAQFDLLDTT VPRDNEGRLL LERDIFGRSC LNVLACEGAD 600 RVERPETYKQ WQLRNHRAGL RQLPLNPEVV KLVLDKVKDN YHRNFVVDAD QRWLLHRWKG 660 RVLYAWSSWI AADAT

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MAATPEEFLG QQGFLARLEP PSPSLFLDLP PTPRDDDGHS SFDDMVLPYI SRLLMEEGTE  60
DHLFYLYPNH PAVLRAQQPF AQILVDVADS ASASGSTSSP SPSSSSDATA STTPSTATAS  120
ASASPDDAPV QISRPPYTDV NGHASASPDN HSSGLLNGDE MAKRPSSDFF SHLLPGDQDM  180
LNLAFRKGME EASKFLPPDI SLPPINEGTV VGGGNAVSLK KKRAALPLEP DVGRPSKLMM  240
PEQEERKMFD EMMFQEHEIC MKGTHNLIAA ADGEPGKNSR KKDRSRKAVD DREMVDLHTL  300
LLNCAQALST DNRQSAIELL KRIRQHSSPK GDAGQRLAHY FANGLEARLA GRGSELYQSL  360
LLSRISVADF LKANQLYMAA CCCKKVAYIF ADKTICNAVA GKRRLHIVDY GLNQGLQWPG  420
LLRMLAAREG GPPEVRITGI DLPQPGFHGA YHIEETGRRL SNFARVFGVP FKFRGIPAKR  480
ETVRPEDLNI DRDEVLVVIS LCQFRHLMDE SLGFDGPSPR DQVLNNIRKM RPDVFIHGIM  540
NGSYGATSFL TRFREALFHY SAQFDLLDTT VPRDNEGRLL LERDIFGRSC LNVLACEGAD  600
RVERPETYKQ WQLRNHRAGL RQLPLNPEVV KLVLDKVKDN YHRNFVVDAD QRWLLHRWKG  660
RVLYAWSSWI AADAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-43	281	625	3	334	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK367226	0.0	AK367226.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2053C24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172168.1	0.0	scarecrow-like protein 34
TrEMBL	A0A3B6JJ22	0.0	A0A3B6JJ22_WHEAT; Uncharacterized protein
TrEMBL	A0A453HSQ5	0.0	A0A453HSQ5_AEGTS; Uncharacterized protein
STRING	Traes_4DS_A5CD70F30.3	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-137	SCARECROW-like 14