![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT03069 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 799aa MW: 87783.9 Da PI: 6.5491 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 330.3 | 3.7e-101 | 414 | 789 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++ L++cA+av++gd++ ++lL ++++++sp+gd++qRla +f+e+L+arla+++s++y++l +++ts + e l a+kl+ +s + k+ ++ + EMT03069 414 LRTMLIHCAQAVATGDHRGSNELLRQIKQHSSPKGDATQRLAYCFAEGLEARLAGTGSHVYRSLVAKSTS---VGEFLRAYKLYMAASSFKKVNFIFVGKI 511 5789***************************************************************999...9*************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 I++a+ g++r+Hi+D+++++G+QWp Llq La+R++gpp++RiTg++ p++g + ++eetg+rL+k A+e+gvpf+++ + +le+++ e+L+++p E EMT03069 512 IMDAMVGKSRLHIVDYNVEYGFQWPGLLQMLAEREGGPPEVRITGIDVPQPGfrPAFQIEETGRRLSKCAQEFGVPFKYHG-IPAKLETVHAEDLKIDPYE 611 ***************************************************999***************************.799**************** PP GRAS 201 alaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +l+V +++ +l+desv ++ +rd vL +++++P+v++ + + ++++ F++rf eal +ysa fd+l+a++pr++++r +Er ++g+ + n EMT03069 612 VLIVTSQYGFSNLMDESVIMDRqdipsPRDMVLTNIRKMRPDVFIDCVVNGTYSAPFFVTRFREALFTYSAQFDMLDATIPRDNDDRLLIERDIFGPCALN 712 **************99987665556669************************************************************************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 v+acega+r+ r et+++W+ r ++aG+++vpls ++k +k ++ + + + ++ ++ +l++gWk+r L+++S W EMT03069 713 VIACEGADRVDRPETYKQWQVRGHRAGLRQVPLSPAVVKLVKDKVKSLYHKDFLIDVDNRWLLQGWKGRVLYAMSTW 789 *************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.972 | 388 | 770 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-98 | 414 | 789 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 799 aa Download sequence Send to blast |
MAATPDEFLR AGDAEPFSPS LFLDLPPTPS PPRAPASDDL DFISRMLMEE DIDDKFFYQY 60 PDHPAILSAQ HHFAQIISDS NTDDSANTAV ASSTFSSDSA TARSASSCSD SATNTGKSTS 120 SSHSATNTAH STSCSSSPGA LGPANPTWPY ERIDLSQPLH SPPYIGLGFP VDGANNLLFS 180 GVGTPTSGYF GHTPALSRGN NDHFVAPAGQ NGRSTGIQSF ATFANSSAAK DAKTLSNNGT 240 EKAAKPATQP ACRGGPGTPA SAFFNGQTDG DVDMLNMAFR KGMEEANKFL PTNNTLDAIS 300 NRPVPRDFTG DQLKKEEVDR LRMLMFSNGR GRKNRHGVED LEAEAGRRCK LMMPEQEETG 360 VGEMVEEIML HGHDIIMKGI EDLHIAMGTE AEKNHRKGTG KAARGRRGAS EVDLRTMLIH 420 CAQAVATGDH RGSNELLRQI KQHSSPKGDA TQRLAYCFAE GLEARLAGTG SHVYRSLVAK 480 STSVGEFLRA YKLYMAASSF KKVNFIFVGK IIMDAMVGKS RLHIVDYNVE YGFQWPGLLQ 540 MLAEREGGPP EVRITGIDVP QPGFRPAFQI EETGRRLSKC AQEFGVPFKY HGIPAKLETV 600 HAEDLKIDPY EVLIVTSQYG FSNLMDESVI MDRQDIPSPR DMVLTNIRKM RPDVFIDCVV 660 NGTYSAPFFV TRFREALFTY SAQFDMLDAT IPRDNDDRLL IERDIFGPCA LNVIACEGAD 720 RVDRPETYKQ WQVRGHRAGL RQVPLSPAVV KLVKDKVKSL YHKDFLIDVD NRWLLQGWKG 780 RVLYAMSTWV AGDHDNSKF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-38 | 420 | 789 | 25 | 378 | Protein SCARECROW |
5b3h_A | 4e-38 | 420 | 789 | 24 | 377 | Protein SCARECROW |
5b3h_D | 4e-38 | 420 | 789 | 24 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK364983 | 0.0 | AK364983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030A10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172213.1 | 0.0 | scarecrow-like protein 34 | ||||
TrEMBL | A0A453HTT1 | 0.0 | A0A453HTT1_AEGTS; Uncharacterized protein | ||||
TrEMBL | R7W0I8 | 0.0 | R7W0I8_AEGTA; Uncharacterized protein | ||||
STRING | EMT03069 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-141 | GRAS family protein |