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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT02903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | bHLH | ||||||||
Protein Properties | Length: 430aa MW: 45464.8 Da PI: 8.0543 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.2e-05 | 315 | 352 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L EMT02903 315 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 352 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.227 | 303 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-7 | 313 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.27E-5 | 313 | 355 | No hit | No description |
SuperFamily | SSF47459 | 1.02E-10 | 313 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MHNGGGGGGA VSHGMWWNTN TTAVPAAACS TELAGFNAWP AAQLAAGGGY DMAVADGGKA 60 KSCTTTASSE SPRNNRSLTF QETASISDPA AGFTDWNTPY MSNGGAGNMH GFLQVGHHDM 120 SSRTDQQSHM NASSLMNDPS PNNLDLALQA PPPQQHQQAD DPHRQQQLLS SLGAPELLLS 180 PNSPYGFQSS SLLRSLLEPM AKPAPAAGIQ QYQYQQMGGQ AGVREPLHFT NDAAFWNPSA 240 GFGMAMPAPA VSEQTSARAV KRPSPAPRGA NLALKSVLEG VGDSSSIVTK KANSEPAFKK 300 PRTETPSSLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS VLHETIEYIK FLHDQAGVLS 360 APYLKRGHHQ HQVPQYLKSS SVSPDKSCKD GGGEVSLKGR GLCLVPISST FAVASDGPVD 420 FWTPFGGQFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369505 | 0.0 | AK369505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092J07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190605.1 | 0.0 | transcription factor bHLH112-like isoform X1 | ||||
TrEMBL | N1QRM0 | 0.0 | N1QRM0_AEGTA; Transcription factor bHLH112 | ||||
STRING | EMT02903 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 4e-46 | bHLH family protein |