PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02642
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 539aa    MW: 58541.6 Da    PI: 7.7532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02642genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06150171526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               +C+ f ++  C++Gd C +aHg
  EMT02642 150 PCPEFKKGAGCRRGDMCEYAHG 171
               8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.8E-4145172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4148172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258150173IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.324181205IPR000571Zinc finger, CCCH-type
SMARTSM0035632181204IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MGEASEYDGV DVAAVSARLL ELVADDDVTA LVDLLAAHPL LADEPAPWVL SGAGRGAHDA  60
AHGRRRVRLK GNTVRTKCPG LRARKEWPPD PSLPDIKNGA YASDDFRMYS FKVRACSRAY  120
SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFKKGAGC RRGDMCEYAH GVFESWLHPA  180
QYRTRLCKAG IGCARRVCFF AHTPEELRPL YVSTGSAGAA PPAMTETTWD CHRRAGNLHL  240
SRLRTSLSAR AMAVDELLAS GDYDNHLGSP ASVRSARGKA LVPSNLDELF SAEMAASHSP  300
RYGDQGGAAF SPTHKAAFLN QFQQHQRGTM TTTLDRLPLC DGGLPLAARE KMQQQTLRSM  360
SSRDLGSSAP LLVGSPVVGS SWSKWGLPSG TPDWGADNDE LGRLKRSSSF DLRSGANTDE  420
PDLSWVNTLV KEPTPEKSST NGTMATESIG ILGRSASHHE SIAGDDSAIL GRSANHREGI  480
DGEEDAATGV IGGWLEQLQL DEMGIKPFRA GKKNPRSAGA LTKIVLGVWT DPFSFSWRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3649400.0AK364940.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2029J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177942.10.0zinc finger CCCH domain-containing protein 67-like
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLN1QSC30.0N1QSC3_AEGTA; Zinc finger CCCH domain-containing protein 67
STRINGEMT026420.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-122CCCH-type zinc finger protein with ARM repeat domain