PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02636
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 767aa    MW: 81562.7 Da    PI: 6.1192
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02636genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-20108164157
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
               +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  EMT02636 108 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 164
               688999************************************************995 PP
2START156.62e-492714741189
               HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
     START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
               ela +a++el+++a +++p+W + +     ++++e+ + f + ++          +ea+r+ +vv+m++a lve+l+d++ q+   +     +a+tlev+s
  EMT02636 271 ELAVAAMEELLRMARLDDPLWATTVdqaLALDEEEYARMFIDPRGglgpkrcgLVSEASRDAAVVIMTPASLVEILMDVN-QYAAVFSsivsRAATLEVLS 370
               57899********************8776688888888886666679*********************************.66666655555********* PP

               TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S.SXXHH CS
     START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg.rlphw 179
               +g      galq+m+ e+q++splvp R+++fvRy+++  +g w++vdvS+d  q +       +++++pSg+li++ +ng+skvtwvehv+ ++ +++h 
  EMT02636 371 TGvagcydGALQVMSVEFQVPSPLVPtRESYFVRYCKRNADGAWAVVDVSLDGLQGV-------KCRRRPSGCLIQEAPNGYSKVTWVEHVEAGDdAMVHD 464
               ****************************************************99985.......699*************************9752678** PP

               HHHHHHHHHH CS
     START 180 llrslvksgl 189
               l+r+lv+sg 
  EMT02636 465 LYRPLVNSGP 474
               *******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-2293163IPR009057Homeodomain-like
SuperFamilySSF466891.13E-1999165IPR009057Homeodomain-like
PROSITE profilePS5007117.07105165IPR001356Homeobox domain
SMARTSM003892.3E-20106169IPR001356Homeobox domain
CDDcd000861.30E-19107166No hitNo description
PfamPF000466.2E-18108163IPR001356Homeobox domain
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PROSITE profilePS5084830.117262473IPR002913START domain
CDDcd088752.09E-90268471No hitNo description
SuperFamilySSF559611.41E-27269473No hitNo description
SMARTSM002344.5E-39271491IPR002913START domain
PfamPF018522.2E-41272474IPR002913START domain
Gene3DG3DSA:3.30.530.205.1E-4333455IPR023393START-like domain
SuperFamilySSF559611.26E-23523754No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MPSSMIGRSS GGAPYGSSSA LSLGQPNLLD GSNQHLLPHH LLEQIPARAA ESGDNNGSVG  60
GGVGMIRGRD SMDPLGDEFE SRSGSENVDG DAVDNAEQEQ DPNQRPRKKR YHRHTQHQIQ  120
EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKNQHERHE NSQLRADNDK  180
LRAENMRYKE ALSSASCPNC GGPAGAGRGD AHPHLRHPPP VRRQAHRSPV PRCSPSPLAA  240
APGASAYDVF AGAASVLQAP PDDKQQGVVV ELAVAAMEEL LRMARLDDPL WATTVDQALA  300
LDEEEYARMF IDPRGGLGPK RCGLVSEASR DAAVVIMTPA SLVEILMDVN QYAAVFSSIV  360
SRAATLEVLS TGVAGCYDGA LQVMSVEFQV PSPLVPTRES YFVRYCKRNA DGAWAVVDVS  420
LDGLQGVKCR RRPSGCLIQE APNGYSKVTW VEHVEAGDDA MVHDLYRPLV NSGPSAPAGG  480
SASSAASASA SPAPWPATSQ PAISEITNRG APRSICAVIT SSEGRKSMLK LAERMVASFC  540
GGVTASVAHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV LNAATSFWLP VPPKRVFDFL  600
RDETSRSEWD ILSNGGIVQE MAHIANGRDH GNCVSLLRVN STNSNQSNML ILQESCTDAS  660
GSYVIYAPVD VVAMNVVLNG GDPDYVALLP SGFAILPDGP AGTMHAAAGA TGTGGSLLTV  720
AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKPAVISN GGASPPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619710.0AK361971.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199198.10.0homeobox-leucine zipper protein ROC2-like
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLR7W5E90.0R7W5E9_AEGTA; Uncharacterized protein
STRINGEMT026360.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]