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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT02450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 391aa MW: 44452.7 Da PI: 4.9711 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.5 | 7.3e-06 | 113 | 136 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff G+C+ G +CkF+H+ EMT02450 113 KSILCEFFKV-GQCQKGFKCKFSHD 136 6779**9999.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.831 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-6 | 111 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.338 | 184 | 222 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8 | 184 | 221 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 1.9E-15 | 241 | 319 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MPPKKAAASK ADVAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQSVQPK PDPTKTAAKA 60 RGNTQIEAVN SLIRLLCSSD KKKEEEKARE KELNDLFKVA VSQPKVPVGV DPKSILCEFF 120 KVGQCQKGFK CKFSHDLNVQ RKGEKIDIYS DKRDGEEEDT MDDWDQETLE KVIASKNAEY 180 QQNKPTDIVC KHFLDAVEKK QYGWFWVCPN GGKECRYRHA LPPGYVLKSQ MKALLEEESK 240 KVAIEDEIED QRRKVQTTTP MTTELFMEWK RRKAEEKEAG LAALRADRAK NDRMSGRELF 300 MADASVFIDD AEAYEVYERR EEPQANQEQG KKSQDEGPSS STSNGKEADE ELDDEDLDDD 360 DDLDLDELNE LEASLSRTSI QIREPGEGTS S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 272 | RRKVQTTTPMTTELFMEWKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250766 | 0.0 | AK250766.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88g07, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159449.1 | 0.0 | zinc finger CCCH domain-containing protein 11 | ||||
Swissprot | Q0JHZ2 | 0.0 | C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11 | ||||
TrEMBL | R7W0S4 | 0.0 | R7W0S4_AEGTA; Zinc finger CCCH domain-containing protein 11 | ||||
STRING | EMT02450 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8859 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 1e-142 | C3H family protein |
Publications ? help Back to Top | |||
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