PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT02379

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C3H

Protein Properties

Length: 980aa MW: 106274 Da PI: 5.8895

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT02379	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.2	5.7e-08	346	367	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++C+ffa+ G C++G++C++ H EMT02379 346 KRPCKFFAE-GRCRRGETCPYLH 367 689****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.3E-5	340	369	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.831	343	370	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.7E-6	343	369	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.5E-7	344	368	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-5	346	367	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence Send to blast
MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN 60 LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEAHNN DDWGKLASLE 120 KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GTEVAPEAGV 180 ESELEGEAEV EVGVLILTVD LIGGLREAEY LEGLLCSAEI LQLVDAEEAC IAGFLMKMVG 240 EGSSTSLIPQ TRGKGMAIRT RISWIHENQM TMYGAGNLEV ILMKVLGKDL NPEEITGLLI 300 NAMSLSKEGA AEVQVADMFM MSPLLMLDGE MMLGKQLMTE HRREQKRPCK FFAEGRCRRG 360 ETCPYLHEEA PQSQMGPGAS DEPPKYSGGR TPRGNYSNWG EETNATHAGS HILSRDDREN 420 TGSQHTARSD TGYGYKSRQL EDAGRDQYQI IPQEDFGSQG RNKPEMSASK QPQFLSPIQT 480 SADSMNNDKV SDMDGLSASA TTGNLSMQTG IHAANLLGGQ SLSQIAQSQD AVPQTSGAPI 540 HPVTSQQQDA TSVLPFNIQP HESNFSLHPN RQDQFSNFSL HPDRQDQFVA SQATANNSAP 600 SMQNQPVAAP YMGHSQHSYT LGSQALPAFN GHNFSVAGQV PQDRPTPFYA GQSQATVDMS 660 NPNQESGTHS MQNTHSFQPV APNMQARSQA LQGLSGVPGQ DTGTQSIQNA HNFQPVAPPY 720 MQNRGQTLQG LSILPSSSSA DMPGAPPVPP NEEEIRRSLT SLAATLIMQP GTVAGLQLPQ 780 PILNPSLMAS LSAVEPSQWP WAQQHKAGTT QLAQQQQAGM TQLAQSEQQA PQQTLPAPST 840 AVGSSNGHNP AQSIGQTAAT SVVTAPQAAE NKKVEAKAKD NDGEQDGDKN KKGNKEESKA 900 LKMFKLALAD FVKDALKPTW KEGQLTREVH KTIVKKVVDK VTSTVENTPP TKEKIDVYMS 960 YSKEKLSKLV QAYVGKYVKA

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence Send to blast

MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN  60
LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEAHNN DDWGKLASLE  120
KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GTEVAPEAGV  180
ESELEGEAEV EVGVLILTVD LIGGLREAEY LEGLLCSAEI LQLVDAEEAC IAGFLMKMVG  240
EGSSTSLIPQ TRGKGMAIRT RISWIHENQM TMYGAGNLEV ILMKVLGKDL NPEEITGLLI  300
NAMSLSKEGA AEVQVADMFM MSPLLMLDGE MMLGKQLMTE HRREQKRPCK FFAEGRCRRG  360
ETCPYLHEEA PQSQMGPGAS DEPPKYSGGR TPRGNYSNWG EETNATHAGS HILSRDDREN  420
TGSQHTARSD TGYGYKSRQL EDAGRDQYQI IPQEDFGSQG RNKPEMSASK QPQFLSPIQT  480
SADSMNNDKV SDMDGLSASA TTGNLSMQTG IHAANLLGGQ SLSQIAQSQD AVPQTSGAPI  540
HPVTSQQQDA TSVLPFNIQP HESNFSLHPN RQDQFSNFSL HPDRQDQFVA SQATANNSAP  600
SMQNQPVAAP YMGHSQHSYT LGSQALPAFN GHNFSVAGQV PQDRPTPFYA GQSQATVDMS  660
NPNQESGTHS MQNTHSFQPV APNMQARSQA LQGLSGVPGQ DTGTQSIQNA HNFQPVAPPY  720
MQNRGQTLQG LSILPSSSSA DMPGAPPVPP NEEEIRRSLT SLAATLIMQP GTVAGLQLPQ  780
PILNPSLMAS LSAVEPSQWP WAQQHKAGTT QLAQQQQAGM TQLAQSEQQA PQQTLPAPST  840
AVGSSNGHNP AQSIGQTAAT SVVTAPQAAE NKKVEAKAKD NDGEQDGDKN KKGNKEESKA  900
LKMFKLALAD FVKDALKPTW KEGQLTREVH KTIVKKVVDK VTSTVENTPP TKEKIDVYMS  960
YSKEKLSKLV QAYVGKYVKA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249720	0.0	AK249720.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf45g01, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174957.1	0.0	zinc finger CCCH domain-containing protein 55-like isoform X2
Swissprot	Q6YYC0	0.0	C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBL	N1QR93	0.0	N1QR93_AEGTA; Zinc finger CCCH domain-containing protein 55
STRING	EMT02379	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7766	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-08	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]